rs213684230 SNP Detail

Summary

• ID
  rs213684230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142619645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATTTCT ACACCAGCCA
  CATCCTGCAA AGTAGGATGC AAGGTGAGGC TATGAGAACT TGAACATCTC AGTGCAGGAC
  TGTATCAGGC TCTTGTCTCT CAATGGCTCT GTGTGGCTCA TGCTTAATCA GGACATGGTT
  GGTGGATATG GCCAACCCCC TTGGCACATA GCTGTTGGTC ATGTGGGCTA GGCCTGGGCT
  Y
  GCTGGTCAAG GCTCTGACCT CTTCTTTCCC CTAGTTCTTC ACCTGCCTTG TGATCCTGTT
  TGCCTGTGAG GTGGCTGCAG GCATCTGGGG CTTCGTAAAC AAAGACCAGG TAAGCCTAGG
  TTCACCGAGT GGGAGATATG CCCTCTGCCC TCCAACAGAT GTGGGTTGCT CTGAGCCCAT
  AGTTATAGGG TGCTTTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322473967	CHEV_7_150251813	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213684230					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142619645 () rs orientation: forward

Symbol	Name	Function Class
Cd81	CD81 antigen	within coordinates
Tssr70273	transcription start site region 70273	949 bp downstream
Tssr70274	transcription start site region 70274	931 bp downstream
Tssr70275	transcription start site region 70275	145 bp downstream
Tssr70276	transcription start site region 70276	114 bp downstream
Tssr70277	transcription start site region 70277	25 bp upstream
Tssr70278	transcription start site region 70278	822 bp upstream
Tssr70279	transcription start site region 70279	1457 bp upstream
Tssr70280	transcription start site region 70280	1493 bp upstream
Tssr70281	transcription start site region 70281	1627 bp upstream