rs213688400 SNP Detail

Summary

• ID
  rs213688400
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9303261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATGCTTT TAGTTCCCAG
  AAAGAGGAGT AGTTTTCTCT TTTTTTTTTT TTTTTTCACA TGTGACTAGT CTAGCAGTCA
  TCTAGACTCT GTCTTGCATT TCTGGATGCC CATAAAATAT CGGATGTGAT TTTACTCTTA
  ACCCAGTTAT TTGGGGATTA CAGTTTCTAA AATTTATATT TTAGGAAGAT GGTGATGCTG
  R
  TACTAGTGGT GATGAAAATG CTGCAATTAA AAAAAAAAAA ACAAGTTATT GTCTATGCAC
  ATAAGATCTA TTTGTATAGG TATTTAAGCC AAAGAAGAAA TGGATTCTAA GCAGGATATG
  TATTATCATG TATACATTTC TTAGAATTCA GTTCAAAGTT TGGCTGGAGC AGATCATTTC
  TGTCAGTAAA TAAATGTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403025266	MGP_WTSI_X_9014148	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213688400					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403025266	MGP_WTSI_X_9014148	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9303261 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160517	transcription start site region 160517	1523 bp downstream
Tssr160518	transcription start site region 160518	1021 bp downstream
Tssr160519	transcription start site region 160519	377 bp downstream
Tssr160520	transcription start site region 160520	313 bp downstream
Tssr160521	transcription start site region 160521	259 bp downstream
Tssr160522	transcription start site region 160522	142 bp downstream
Tssr162873	transcription start site region 162873	1374 bp upstream
Tssr162874	transcription start site region 162874	1118 bp upstream
Tssr162875	transcription start site region 162875	1095 bp upstream
Tssr162876	transcription start site region 162876	939 bp upstream
Tssr162877	transcription start site region 162877	920 bp upstream
Tssr162878	transcription start site region 162878	868 bp upstream
Tssr162879	transcription start site region 162879	762 bp upstream
Tssr162880	transcription start site region 162880	676 bp upstream
Tssr162881	transcription start site region 162881	658 bp upstream
Tssr162882	transcription start site region 162882	358 bp upstream
Tssr162883	transcription start site region 162883	19 bp downstream
Tssr162884	transcription start site region 162884	61 bp downstream
Tssr162885	transcription start site region 162885	105 bp downstream
Tssr162886	transcription start site region 162886	152 bp downstream
Tssr162887	transcription start site region 162887	179 bp downstream
Tssr162888	transcription start site region 162888	232 bp downstream
Tssr162889	transcription start site region 162889	262 bp downstream
Tssr162890	transcription start site region 162890	322 bp downstream
Tssr162891	transcription start site region 162891	356 bp downstream
Tssr162892	transcription start site region 162892	409 bp downstream
Tssr162893	transcription start site region 162893	513 bp downstream
Tssr162894	transcription start site region 162894	543 bp downstream
Tssr162895	transcription start site region 162895	603 bp downstream
Tssr162896	transcription start site region 162896	629 bp downstream
Tssr162897	transcription start site region 162897	656 bp downstream
Tssr162898	transcription start site region 162898	680 bp downstream
Tssr162899	transcription start site region 162899	826 bp downstream
Tssr162900	transcription start site region 162900	836 bp downstream
Tssr162901	transcription start site region 162901	867 bp downstream
Tssr162902	transcription start site region 162902	949 bp downstream
Tssr162903	transcription start site region 162903	1010 bp downstream
Tssr162904	transcription start site region 162904	1111 bp downstream
Tssr162905	transcription start site region 162905	1195 bp downstream
Tssr162906	transcription start site region 162906	1199 bp downstream
Tssr162907	transcription start site region 162907	1272 bp downstream
Tssr162908	transcription start site region 162908	1296 bp downstream