rs213697810 SNP Detail

Summary

• ID
  rs213697810
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135159273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGCTCA ATGGCGAGAG
  GGTTTTTCTG TTTCTCTGTT TTCATATTGA GGATTGAACC TGGCATCTCC AGCATGCCGG
  TCAAGGGCTT TACCATTGAA CTACATCACT CTAGGCCAGG CTGAGCTTTG TGTAGGTTTT
  TGGAGCTGGG TGGCAGGTCT GGAGCTCTAA GTTATAGTAT CTTCATGCCT GCCCACCCCC
  S
  CTTTGGACCC ACACTTCCTG TAACATCATG CAGCATTGCT TCTCGTGGGT TAGTGAGCAC
  TCCAAGGTTT TAAAACCTTA AAATATAGCA TGATTGAATA GTTAAAAAAA AAAAAATCAA
  ATCTGTGTTC CCCCAAAACA CTAAAAGCTC CTCTCTTGGA AACTGGCTGC CAATGAAGCA
  AATTGGAAAG CTGCAGTGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321352212	CHEV_4_134987877	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213697810					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135159273 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15072	CpG island 15072	1209 bp proximal
Gm15979	predicted gene 15979	1121 bp upstream
Gm69862	predicted gene, 69862	1967 bp upstream
Rcan3	regulator of calcineurin 3	within coordinates
Rr602030	regulatory region 602030	1123 bp proximal
Rr602031	regulatory region 602031	1881 bp proximal
Rr602032	regulatory region 602032	1978 bp proximal
Tssr43991	transcription start site region 43991	1782 bp downstream