rs213704887 SNP Detail

Summary

• ID
  rs213704887
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128516463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTACCACA CATTCTGGAA
  TGTTCAGTTT CTTCCTCTAC AGTTCTACAG TCCTACACAC AGATAAACAG CTACTAAGAA
  CTTGGCCACA GGTCCTGCCT AGACACTCAT TCACATGAAA CAAACAAACA AAAAAAAGTA
  TTTATATAAA TTAAGTCAAA CCTCACAAAA ACTAGAGGAA CATAAACTCC CAACAGTCAA
  T
  AAAAAAAAAA AACTGTACAA GACTGGTCAG TCTCTTATAT CTGGAAAATG TGTAACATAA
  AAAAGTTCTT TATCATATAT ATATATATAT ATATTATATA TGTCTTTGCA TAAGTGTTAG
  CTGGAGTGAA AACTGGAGGA TTCTGACTCC GTGGAGACGG AAGAGTGTCC ACCCCGCTTT
  CCTTTGGAAA GGATCTTGAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351391144	MGP_WTSI_1_130485303	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213704887					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351391144	MGP_WTSI_1_130485303	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128516463 () rs orientation: forward

Symbol	Name	Function Class
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Rr12058	regulatory region 12058	863 bp distal
Rr28453	regulatory region 28453	137 bp proximal
Tssr195	transcription start site region 195	1785 bp upstream
Tssr13461	transcription start site region 13461	264 bp upstream
Tssr13462	transcription start site region 13462	94 bp upstream
Tssr13463	transcription start site region 13463	within coordinates
Tssr13464	transcription start site region 13464	31 bp downstream
Tssr13465	transcription start site region 13465	49 bp downstream
Tssr13466	transcription start site region 13466	114 bp downstream
Tssr13467	transcription start site region 13467	161 bp downstream
Tssr13468	transcription start site region 13468	250 bp downstream
Tssr13469	transcription start site region 13469	303 bp downstream
Tssr13470	transcription start site region 13470	398 bp downstream
Tssr13471	transcription start site region 13471	467 bp downstream
Tssr13472	transcription start site region 13472	536 bp downstream
Tssr13473	transcription start site region 13473	549 bp downstream
Tssr13474	transcription start site region 13474	605 bp downstream
Tssr13475	transcription start site region 13475	629 bp downstream
Tssr13476	transcription start site region 13476	646 bp downstream
Tssr13477	transcription start site region 13477	707 bp downstream