rs213719403 SNP Detail

Summary

• ID
  rs213719403
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79229828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTTAGA GTCAAACCAT
  TTTGGTACTT ATCAGCCCTT GGGCATGTAT CCTGGAACCT CCAGTGCTCT GTTCATCAGA
  TAGGTCAGGC TACTGAGTCC TACTGGAAAG GTTTGTTCGA AAGGCTGAAA TGCATAAATG
  TTAGGCCTTT TAAAGGTCTT TACAGTATGG TGAACTAGTC TTCAATCTGA ATTATCATCC
  K
  TGCAAAAAGT TTTATTAACT TGGTTGTCCG TCAGTTTAGT TGAGGAATTT CGGATTGGGG
  AATTCTAGTC TCCAACTTGG ATCACCACTG GGCCTTGCTT TGGAATTTAA GCGACATTAA
  AAAGAAAAAA ATCACGGAAT CTCTCTTGGC CTTCTTTTTA CCCGTTTTCA GCAGCCTTCA
  GAAGCCCCAT CGACTGCGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383977209	MGP_WTSI_11_79152504	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213719403					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383977209	MGP_WTSI_11_79152504	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79229828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3366	CpG island 3366	195 bp proximal
Gm57411	predicted gene, 57411	within coordinates
Gm73396	predicted gene, 73396	within coordinates
Gm73418	predicted gene, 73418	within coordinates
Nf1	neurofibromin 1	691 bp upstream
Rr236740	regulatory region 236740	1828 bp distal
Rr247290	regulatory region 247290	within coordinates
Rr251790	regulatory region 251790	1028 bp distal
Rr253753	regulatory region 253753	1853 bp distal
Rr402772	regulatory region 402772	359 bp upstream
Tssr3597	transcription start site region 3597	637 bp upstream
Tssr103438	transcription start site region 103438	580 bp upstream
Tssr103439	transcription start site region 103439	639 bp upstream
Tssr103440	transcription start site region 103440	847 bp upstream
Tssr109477	transcription start site region 109477	292 bp downstream