rs213724540 SNP Detail

Summary

• ID
  rs213724540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164285211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGGAAA GGGAGGGTAC
  ATACATAGGC TCCTGGAACC TGACCGAATT TCCCAGGAGG AAAGGCTTAG GAAACGAAGA
  TCCCTACCAT ACCCAAAACC CTAGCTCCAG CTCCCCACCC GAGGCGCATC CTGGGGACCC
  CCCACATTTG TCACTGGATG CCAAGCCCAG GGCCGCACGC TCCTAGCAGC TCCTACCACC
  Y
  ACTCCCTAAC ACCCTGGTCA GCCCCGCGGG CGCCGAACTG TCCGCAGTGC TCGCGTACAG
  ACGCGCCTCC TAAGAAAAGC CAAGGCGCCG ACGGCAGAGC CGCGGAGCGC GTACTTACAC
  CAACTACCAC CGGTCCTGCC CAAAAACTCC TTCTTCTCCG AGTTCCAGAT GAATTTCTTC
  CAGCTGCCTT CCTCCTTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352216950	MGP_WTSI_1_166387773	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213724540					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352216950	MGP_WTSI_1_166387773	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164285211 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	Intron
Cpgi945	CpG island 945	within coordinates
Gm32391	predicted gene, 32391	881 bp upstream
Gm70485	predicted gene, 70485	1969 bp downstream
Gm70492	predicted gene, 70492	831 bp downstream
Rr422210	regulatory region 422210	1033 bp distal
Rr422211	regulatory region 422211	1412 bp distal
Rr422212	regulatory region 422212	within coordinates
Rr422213	regulatory region 422213	469 bp proximal
Rr422214	regulatory region 422214	597 bp proximal
Rr422215	regulatory region 422215	703 bp proximal
Rr422216	regulatory region 422216	761 bp proximal
Rr422217	regulatory region 422217	874 bp proximal
Rr422218	regulatory region 422218	1094 bp proximal
Tssr9788	transcription start site region 9788	875 bp upstream
Tssr9789	transcription start site region 9789	894 bp upstream
Tssr14746	transcription start site region 14746	352 bp downstream
Tssr14747	transcription start site region 14747	703 bp downstream
Tssr14748	transcription start site region 14748	1083 bp downstream