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rs213724540 SNP Detail
Summary
  • ID
    rs213724540
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:164285211 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAGATGGAAA GGGAGGGTAC
    ATACATAGGC TCCTGGAACC TGACCGAATT TCCCAGGAGG AAAGGCTTAG GAAACGAAGA
    TCCCTACCAT ACCCAAAACC CTAGCTCCAG CTCCCCACCC GAGGCGCATC CTGGGGACCC
    CCCACATTTG TCACTGGATG CCAAGCCCAG GGCCGCACGC TCCTAGCAGC TCCTACCACC
    Y
    ACTCCCTAAC ACCCTGGTCA GCCCCGCGGG CGCCGAACTG TCCGCAGTGC TCGCGTACAG
    ACGCGCCTCC TAAGAAAAGC CAAGGCGCCG ACGGCAGAGC CGCGGAGCGC GTACTTACAC
    CAACTACCAC CGGTCCTGCC CAAAAACTCC TTCTTCTCCG AGTTCCAGAT GAATTTCTTC
    CAGCTGCCTT CCTCCTTGGC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss352216950 MGP_WTSI_1_166387773 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213724540 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss352216950 MGP_WTSI_1_166387773 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:164285211 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Atp1b1 ATPase, Na+/K+ transporting, beta 1 polypeptide within coordinates
Cpgi945 CpG island 945 within coordinates
Gm32391 predicted gene, 32391 881 bp upstream
Gm70485 predicted gene, 70485 1969 bp downstream
Gm70492 predicted gene, 70492 831 bp downstream
Rr422210 regulatory region 422210 1033 bp distal
Rr422211 regulatory region 422211 1412 bp distal
Rr422212 regulatory region 422212 within coordinates
Rr422213 regulatory region 422213 469 bp proximal
Rr422214 regulatory region 422214 597 bp proximal
Rr422215 regulatory region 422215 703 bp proximal
Rr422216 regulatory region 422216 761 bp proximal
Rr422217 regulatory region 422217 874 bp proximal
Rr422218 regulatory region 422218 1094 bp proximal
Tssr9788 transcription start site region 9788 875 bp upstream
Tssr9789 transcription start site region 9789 894 bp upstream
Tssr14746 transcription start site region 14746 352 bp downstream
Tssr14747 transcription start site region 14747 703 bp downstream
Tssr14748 transcription start site region 14748 1083 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory