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rs213725656 SNP Detail
Summary
  • ID
    rs213725656
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr19:5849026 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAATACTGCA GATCCAAGTT
ACACTTATCT GTCAACAGCA GTCTGCTGTT TCCTGCTCCG AGATGGAATG AAGCAACTCT
TCTGCTTATG AAGAGAAACC TGTCTGAGGC AAACGAAACA TTGGCACACT GCACCGCCTC
GCAGCCGCTC GATCCCACTC ATCTCAACAA GCTCAGCTTC TTTTTACTCC AGGCTTAATG
Y
AGCATTTTCA CTTCATTTCT ATTCTGCTTT TGTAAAAGCA GTTTTGAGAT GAACATTTGA
TCTTCACTGT TTTTCATCAA TTCTTTACTT TTGTGGATAA AGCTTGGTAG ATAAGCCATA
ACTTTTAAAG GTATTGCCAT AACTTTATAC TGGTTGCTTT CATTTGCTTA AATTTTTGCA
TATGCAGCTT TTCATCAGTA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401662590 MGP_WTSI_19_5798998 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213725656 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401662590 MGP_WTSI_19_5798998 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:5849026 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi10480 CpG island 10480 1983 bp proximal
Gm55521 predicted gene, 55521 2 bp downstream
Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) within coordinates
Tssr5416 transcription start site region 5416 1683 bp upstream
Tssr5417 transcription start site region 5417 28 bp downstream
Tssr5418 transcription start site region 5418 511 bp downstream
Tssr5419 transcription start site region 5419 1165 bp downstream
Tssr5420 transcription start site region 5420 1182 bp downstream
Tssr154496 transcription start site region 154496 1995 bp upstream
Tssr157652 transcription start site region 157652 1894 bp upstream
Tssr157653 transcription start site region 157653 1810 bp upstream
Tssr157654 transcription start site region 157654 1756 bp upstream
Tssr157655 transcription start site region 157655 1730 bp upstream
Tssr157656 transcription start site region 157656 1697 bp upstream
Tssr157657 transcription start site region 157657 1577 bp upstream
Tssr157658 transcription start site region 157658 1471 bp upstream
Tssr157659 transcription start site region 157659 1367 bp upstream
Tssr157660 transcription start site region 157660 1271 bp upstream
Tssr157661 transcription start site region 157661 1238 bp upstream
Tssr157662 transcription start site region 157662 1145 bp upstream
Tssr157663 transcription start site region 157663 1084 bp upstream
Tssr157664 transcription start site region 157664 970 bp upstream
Tssr157665 transcription start site region 157665 961 bp upstream
Tssr157666 transcription start site region 157666 929 bp upstream
Tssr157667 transcription start site region 157667 675 bp upstream
Tssr157668 transcription start site region 157668 634 bp upstream
Tssr157669 transcription start site region 157669 615 bp upstream
Tssr157670 transcription start site region 157670 599 bp upstream
Tssr157671 transcription start site region 157671 578 bp upstream
Tssr157672 transcription start site region 157672 528 bp upstream
Tssr157673 transcription start site region 157673 494 bp upstream
Tssr157674 transcription start site region 157674 482 bp upstream
Tssr157675 transcription start site region 157675 469 bp upstream
Tssr157676 transcription start site region 157676 454 bp upstream
Tssr157677 transcription start site region 157677 432 bp upstream
Tssr157678 transcription start site region 157678 418 bp upstream
Tssr157679 transcription start site region 157679 350 bp upstream
Tssr157680 transcription start site region 157680 323 bp upstream
Tssr157681 transcription start site region 157681 302 bp upstream
Tssr157682 transcription start site region 157682 289 bp upstream
Tssr157683 transcription start site region 157683 253 bp upstream
Tssr157684 transcription start site region 157684 243 bp upstream
Tssr157685 transcription start site region 157685 228 bp upstream
Tssr157686 transcription start site region 157686 167 bp upstream
Tssr157687 transcription start site region 157687 146 bp upstream
Tssr157688 transcription start site region 157688 99 bp upstream
Tssr157689 transcription start site region 157689 62 bp upstream
Tssr157690 transcription start site region 157690 5 bp downstream
Tssr157691 transcription start site region 157691 51 bp downstream
Tssr157692 transcription start site region 157692 105 bp downstream
Tssr157693 transcription start site region 157693 162 bp downstream
Tssr157694 transcription start site region 157694 220 bp downstream
Tssr157695 transcription start site region 157695 284 bp downstream
Tssr157696 transcription start site region 157696 305 bp downstream
Tssr157697 transcription start site region 157697 354 bp downstream
Tssr157698 transcription start site region 157698 370 bp downstream
Tssr157699 transcription start site region 157699 428 bp downstream
Tssr157700 transcription start site region 157700 477 bp downstream
Tssr157701 transcription start site region 157701 495 bp downstream
Tssr157702 transcription start site region 157702 531 bp downstream
Tssr157703 transcription start site region 157703 582 bp downstream
Tssr157704 transcription start site region 157704 608 bp downstream
Tssr157705 transcription start site region 157705 629 bp downstream
Tssr157706 transcription start site region 157706 677 bp downstream
Tssr157707 transcription start site region 157707 723 bp downstream
Tssr157708 transcription start site region 157708 733 bp downstream
Tssr157709 transcription start site region 157709 745 bp downstream
Tssr157710 transcription start site region 157710 764 bp downstream
Tssr157711 transcription start site region 157711 783 bp downstream
Tssr157712 transcription start site region 157712 820 bp downstream
Tssr157713 transcription start site region 157713 847 bp downstream
Tssr157714 transcription start site region 157714 898 bp downstream
Tssr157715 transcription start site region 157715 915 bp downstream
Tssr157716 transcription start site region 157716 959 bp downstream
Tssr157717 transcription start site region 157717 986 bp downstream
Tssr157718 transcription start site region 157718 1031 bp downstream
Tssr157719 transcription start site region 157719 1085 bp downstream
Tssr157720 transcription start site region 157720 1104 bp downstream
Tssr157721 transcription start site region 157721 1140 bp downstream
Tssr157722 transcription start site region 157722 1157 bp downstream
Tssr157723 transcription start site region 157723 1232 bp downstream
Tssr157724 transcription start site region 157724 1241 bp downstream
Tssr157725 transcription start site region 157725 1287 bp downstream
Tssr157726 transcription start site region 157726 1292 bp downstream
Tssr157727 transcription start site region 157727 1307 bp downstream
Tssr157728 transcription start site region 157728 1404 bp downstream
Tssr157729 transcription start site region 157729 1603 bp downstream
Tssr157730 transcription start site region 157730 1733 bp downstream
Tssr157731 transcription start site region 157731 1756 bp downstream
Tssr157732 transcription start site region 157732 1799 bp downstream
Tssr157733 transcription start site region 157733 1836 bp downstream
Tssr157734 transcription start site region 157734 1853 bp downstream
Tssr157735 transcription start site region 157735 1877 bp downstream
Tssr157736 transcription start site region 157736 1915 bp downstream
Tssr157737 transcription start site region 157737 1971 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory