rs213726369 SNP Detail

Summary

• ID
  rs213726369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:38720906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCACTGCA CTGTGCAGAT
  GAAAGACACT TTCCCTGGGT CTGGTCGAGC ACTGTCCTAG GGATGTGCTA GGGATATTTT
  CAACAAGCAA GAGGTCTGTC CTAGGATTCT GGGACAGAAG ATAGTGTAGA CTGTGACTTT
  CTTATTTACT AGAATTGTTT TAGATAACAG CGATAACCTT TCTAAACCAC ACTAAAGTTC
  Y
  CACTCAGCAT GGTACAAAGA CTGCTGGGGT AACACCAGCT CCAAGCTCTT TACAAGCTGA
  TAGCTGTCCT ATGTGCATCA AGCCTTGGTA CTGACACTGA GAGTGATCCT ACAAAACACT
  TTGGGGCCAA GCTCTCTGGC AGAATCCAGA CTCTGTTGCA CTTTAAAAAA TCATGTACCA
  TGCGTCAAGT TTTCCAGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364599157	MGP_WTSI_5_38954802	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213726369					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364599157	MGP_WTSI_5_38954802	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38720906 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15817	CpG island 15817	1380 bp distal
Gm57313	predicted gene, 57313	1422 bp downstream
Gm72219	predicted gene, 72219	within coordinates
Rr399063	regulatory region 399063	1584 bp downstream
Tssr46063	transcription start site region 46063	1638 bp downstream
Tssr50814	transcription start site region 50814	1941 bp upstream
Tssr50815	transcription start site region 50815	1923 bp upstream
Tssr50816	transcription start site region 50816	1883 bp upstream
Tssr50817	transcription start site region 50817	1831 bp upstream
Tssr50818	transcription start site region 50818	1771 bp upstream
Tssr50819	transcription start site region 50819	329 bp upstream
Tssr50820	transcription start site region 50820	311 bp upstream
Wdr1	WD repeat domain 1	641 bp upstream