rs213728381 SNP Detail

Summary

• ID
  rs213728381
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGAGAAAGA GCTGTCGAGA GCTGGAAAAA TACTCCGGGG
  TCAGGGTAGT TTTCCTCATG ACCCAAGTGA CATTGTCTAC ATCACTGCCA TGGTTGGCCA
  S
  GATAAACGTC ATTTAATTCT GTGTGTGTGT GTGTGTGTGT GTATGTGGAT GTCAGAAGTC
  AACCTGTAGT GCACTGGTTC TCAACCTTCC TAATGCTGT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321390088	CHEV_4_141375770	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213728381					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547166 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	778 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	within coordinates
Gm56298	predicted gene, 56298	within coordinates
Tssr40105	transcription start site region 40105	1956 bp downstream
Tssr40106	transcription start site region 40106	1925 bp downstream
Tssr40107	transcription start site region 40107	1873 bp downstream
Tssr40108	transcription start site region 40108	811 bp downstream
Tssr40109	transcription start site region 40109	776 bp downstream
Tssr40110	transcription start site region 40110	753 bp downstream
Tssr40111	transcription start site region 40111	1470 bp upstream
Tssr40112	transcription start site region 40112	1498 bp upstream
Tssr40113	transcription start site region 40113	1527 bp upstream
Tssr40114	transcription start site region 40114	1849 bp upstream
Tssr40115	transcription start site region 40115	1883 bp upstream
Tssr40116	transcription start site region 40116	1923 bp upstream
Tssr44369	transcription start site region 44369	1958 bp upstream
Tssr44370	transcription start site region 44370	1918 bp upstream
Tssr44371	transcription start site region 44371	1887 bp upstream
Tssr44372	transcription start site region 44372	1856 bp upstream
Tssr44373	transcription start site region 44373	1569 bp upstream
Tssr44374	transcription start site region 44374	723 bp upstream
Tssr44375	transcription start site region 44375	490 bp upstream
Tssr44376	transcription start site region 44376	472 bp upstream
Tssr44377	transcription start site region 44377	129 bp downstream
Tssr44378	transcription start site region 44378	248 bp downstream
Tssr44379	transcription start site region 44379	1497 bp downstream
Tssr44380	transcription start site region 44380	1509 bp downstream
Tssr44381	transcription start site region 44381	1865 bp downstream
Tssr44382	transcription start site region 44382	1884 bp downstream
Tssr44383	transcription start site region 44383	1935 bp downstream