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rs213731707 SNP Detail
Summary
  • ID
    rs213731707
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:94843259 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTTTTCTCT CCCCCCCCCC
CCAGGGAGGG CCTGTGCTTT GGGCAGCCAC CTGCCCCTCT CAGGGGTTTG GAGCCAGGCA
GGGTCACAGC AGACTGGAAA CATCGGACAT GCATGTGCAG GCTGGGTGGG AGAGACCGTT
CTATTCCTCA GTGCAATTGT GTTGCTGAAA GACTACCTCG TTCTTGTCTT TGTGTGTCAC
Y
GGGGCAACTG TGTGGGGGCG GGGATGGGGG CAGGGTGGCA GCACGCCCAG TTTGGTATCA
AAGGTGCTAC ATCTCTGTGA AGGGGTGGGG TGGGAAGGAA TTTCTGGTGC TATAGAAGCT
GAGATGCTCC CTAGACCAGC AAATGTTTCT TTTGTTCAAA GTATTTTTTA TTCTTTTTTT
TTTTTTTTTT AATGGATAGG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384336275 MGP_WTSI_11_94813747 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213731707 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss384336275 MGP_WTSI_11_94813747 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94843259 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 within coordinates
D11Lis1 DNA segment, Chr 11, Lisse 1 885 bp proximal
Gm74287 predicted gene, 74287 1818 bp downstream
Rr454892 regulatory region 454892 within coordinates
Tssr3647 transcription start site region 3647 449 bp downstream
Tssr104267 transcription start site region 104267 1999 bp downstream
Tssr104268 transcription start site region 104268 1971 bp downstream
Tssr104269 transcription start site region 104269 1958 bp downstream
Tssr104270 transcription start site region 104270 1937 bp downstream
Tssr104271 transcription start site region 104271 1883 bp downstream
Tssr104272 transcription start site region 104272 1689 bp downstream
Tssr104273 transcription start site region 104273 1595 bp downstream
Tssr104274 transcription start site region 104274 1577 bp downstream
Tssr104275 transcription start site region 104275 1568 bp downstream
Tssr104276 transcription start site region 104276 1557 bp downstream
Tssr104277 transcription start site region 104277 1283 bp downstream
Tssr104278 transcription start site region 104278 1262 bp downstream
Tssr104279 transcription start site region 104279 1205 bp downstream
Tssr104280 transcription start site region 104280 1193 bp downstream
Tssr104281 transcription start site region 104281 1179 bp downstream
Tssr104282 transcription start site region 104282 1109 bp downstream
Tssr104283 transcription start site region 104283 956 bp downstream
Tssr104284 transcription start site region 104284 896 bp downstream
Tssr104285 transcription start site region 104285 866 bp downstream
Tssr104286 transcription start site region 104286 833 bp downstream
Tssr104287 transcription start site region 104287 809 bp downstream
Tssr104288 transcription start site region 104288 769 bp downstream
Tssr104289 transcription start site region 104289 761 bp downstream
Tssr104290 transcription start site region 104290 713 bp downstream
Tssr104291 transcription start site region 104291 698 bp downstream
Tssr104292 transcription start site region 104292 601 bp downstream
Tssr104293 transcription start site region 104293 494 bp downstream
Tssr104294 transcription start site region 104294 460 bp downstream
Tssr104295 transcription start site region 104295 416 bp downstream
Tssr104296 transcription start site region 104296 392 bp downstream
Tssr104297 transcription start site region 104297 369 bp downstream
Tssr104298 transcription start site region 104298 335 bp downstream
Tssr104299 transcription start site region 104299 301 bp downstream
Tssr104300 transcription start site region 104300 281 bp downstream
Tssr104301 transcription start site region 104301 161 bp downstream
Tssr104302 transcription start site region 104302 147 bp downstream
Tssr104303 transcription start site region 104303 128 bp downstream
Tssr104304 transcription start site region 104304 86 bp downstream
Tssr104305 transcription start site region 104305 64 bp downstream
Tssr104306 transcription start site region 104306 49 bp downstream
Tssr104307 transcription start site region 104307 32 bp downstream
Tssr104308 transcription start site region 104308 23 bp upstream
Tssr104309 transcription start site region 104309 43 bp upstream
Tssr104310 transcription start site region 104310 88 bp upstream
Tssr104311 transcription start site region 104311 184 bp upstream
Tssr104312 transcription start site region 104312 254 bp upstream
Tssr104313 transcription start site region 104313 270 bp upstream
Tssr104314 transcription start site region 104314 686 bp upstream
Tssr110222 transcription start site region 110222 1535 bp upstream
Tssr110223 transcription start site region 110223 1176 bp upstream
Tssr110224 transcription start site region 110224 1112 bp upstream
Tssr110225 transcription start site region 110225 896 bp upstream
Tssr110226 transcription start site region 110226 856 bp upstream
Tssr110227 transcription start site region 110227 843 bp upstream
Tssr110228 transcription start site region 110228 783 bp upstream
Tssr110229 transcription start site region 110229 763 bp upstream
Tssr110230 transcription start site region 110230 726 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory