rs213772107 SNP Detail

Summary

• ID
  rs213772107
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135042255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAGGACA GCCTGGGGCA
  AGGAGCAAGT GCACCTCCCT CTTAACACCT TGGAAGGCCC CAAGCCTTTT CCCCAATTCT
  TGCCGTCTGT CGCCTCCAGG GGGCGCTCCA CCCGTGTCTC AGAGGAACAG ACAACCTAGG
  TTTAGTTTAG TTGTAATGCC AAGCATCAGG CAGTGTCTCG TCTAGTCTCC GCCCCCCCTC
  G
  CCCCCCCCCC CCGCCCTGCC ACGAGGGGTT GACTCTGTGC TAGTTCTTCA AGGAATCATC
  TGCCCCCAGA ATTCTTTTTT TTTTTTAATT AAAGATTTAT TTATTATTAT ATGTAAGTAC
  ACTGTAGCTG TCTTCAGACA CACCAGAAGA GGGAGTCAGA TCTTGTTACA GATGGTTGTG
  AGCCACCATG TGGTTACTGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	CE/J	MA/MyJ	NZO/HlLtJ	RIIIS/J	SJL/J
ss366824625	MGP_WTSI_5_135489271	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	CE/J	MA/MyJ	NZO/HlLtJ	RIIIS/J	SJL/J
rs213772107					SNP	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366824625	MGP_WTSI_5_135489271	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135042255 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	1226 bp downstream
Abhd11os	abhydrolase domain containing 11, opposite strand	613 bp upstream
Gm73578	predicted gene, 73578	within coordinates
Rr110217	regulatory region 110217	455 bp distal
Rr110218	regulatory region 110218	within coordinates
Rr110219	regulatory region 110219	1546 bp proximal
Rr124504	regulatory region 124504	54 bp distal
Tssr1662	transcription start site region 1662	664 bp upstream
Tssr1663	transcription start site region 1663	231 bp upstream
Tssr1664	transcription start site region 1664	197 bp upstream
Tssr53717	transcription start site region 53717	640 bp upstream
Tssr53718	transcription start site region 53718	593 bp upstream
Tssr53719	transcription start site region 53719	578 bp upstream
Tssr53720	transcription start site region 53720	533 bp upstream
Tssr53721	transcription start site region 53721	276 bp upstream
Tssr53722	transcription start site region 53722	243 bp upstream