rs213778953 SNP Detail

Summary

• ID
  rs213778953
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71246920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTGCTTT TGCAAAGGAC
  CTGAGTCAGG TTCCCAAAAC CCACATCAGA CCACTTATAA CCAGACATGT CTCCAGGGGA
  TCTGATGCAT CTGACCTCCT AGGACACACA CACATGGGCA CATACCGTCT CCACACAGAA
  ACACACTACA CGCAGGGCGT GGTGGCTGGC ACACACCTTT AATCCCAGCA CTTGGGAGGC
  W
  GAGGCAGGCG GATTTCTGAG TTCGAGGCCA GCCTGATCTA CAAAATGAGT TCCAGGACAG
  CCAGGGCTAC AGAGAAACCC TGTCTCGAAA AGCCAAAAAA AGAAACACAC TACACACACA
  CACACACACA CACACACGAT TATGAGCAGA TCTTTAGGAA CACCACGTTT CTATTTCTTT
  GTAAGTTTTT ATGTAATACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368722053	MGP_WTSI_6_71219930	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213778953					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368722053	MGP_WTSI_6_71219930	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71246920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17522	CpG island 17522	1466 bp proximal
Krcc1	lysine-rich coiled-coil 1	1741 bp upstream
Mir8112	microRNA 8112	1735 bp upstream
Rr379579	regulatory region 379579	36 bp downstream
Rr379580	regulatory region 379580	785 bp upstream
Tssr56988	transcription start site region 56988	938 bp upstream
Tssr56989	transcription start site region 56989	1639 bp upstream
Tssr56990	transcription start site region 56990	1736 bp upstream
Tssr61348	transcription start site region 61348	778 bp downstream
Tssr61349	transcription start site region 61349	795 bp downstream
Tssr61350	transcription start site region 61350	1545 bp downstream