rs213780913 SNP Detail

Summary

• ID
  rs213780913
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127189114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCTTCT TTCAGCTGGA
  TGAAACTGTA GAAGCCCTCC TCCAGTGCTA CGAGAACCAG AGGGAACTGT CTTCAGGGAC
  AGAGGTGCCT GGGTGCCAAG AGGGCCTGAC CCGTGATGTG ATCCCTCGAC CAGACCCAGG
  GACATCAGAT CTGAGGGGTA GGACCAGGGC CCTGGGGAGC TTATGTTCTC AGAAAGGTTT
  K
  GAGGAGGAGG TGACTTTGAT GTGGGGCTAC CGAAATGCCC GGCACTTGGG AAGCAGAAGT
  TGCTGTCCTG GAACTCACTT TGTAGACCAG GCTGGCTTCA AACTCAGAAA TTTGCCTGCC
  TCTGCCTCCC GAGTGCTGGG ATTAAAGGCG TGTGCCACCA CGCCCATCGT GAGACTCTGT
  CTTAAAAACA TGGGTTTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373090075	MGP_WTSI_7_134733456	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213780913					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373090075	MGP_WTSI_7_134733456	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127189114 () rs orientation: forward

Symbol	Name	Function Class
Cfap119	cilia and flagella associated protein 119	1295 bp upstream
Cpgi19755	CpG island 19755	676 bp distal
Gm44759	predicted gene 44759	474 bp downstream
Rnf40	ring finger protein 40	within coordinates
Rr400653	regulatory region 400653	1223 bp downstream
Rr655845	regulatory region 655845	1013 bp distal
Tssr69263	transcription start site region 69263	1217 bp downstream
Tssr69264	transcription start site region 69264	1151 bp downstream
Tssr75012	transcription start site region 75012	1800 bp upstream
Tssr75013	transcription start site region 75013	1752 bp upstream
Tssr75014	transcription start site region 75014	1724 bp upstream
Tssr75015	transcription start site region 75015	1692 bp upstream
Tssr75016	transcription start site region 75016	1664 bp upstream