rs213782309 SNP Detail

Summary

• ID
  rs213782309
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7554307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTAAGGG GAGAGAGGCA
  CAATTATTCT CTTGCAACTC CCTCTACCTT CTGTGTGTGA CTGCGAAGAA GCTTCAGAGG
  AACGAAAGAG GTCCTCAGAT GGCTGGTGGG TACGTTCCAC ATGCTGTTCT ACATGCTACA
  GCGTCCTTGA ATGGCTGGTG GGTAAGTTCT ACATGCTACA GCGTCCTCAG ATGGCTGGTG
  G
  GTAAGTTCTA CATGCTACAG CGTCCTCGGA TGGCTGGTGG GTACGTTCCA CATGCTGTTC
  TACATGCTAC AGCAGGCTTC AATTCTTCTT TCTCCTAAAT GTAAAGCAAG TCTGCTTTCC
  TCCTCTAGAA CACAAGACTG AAACCCCTTT GCAAGGCTAG AGAAATGAGA GAGAGTATTC
  TGGCTGATTT AGGGAGGGAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	ST/bJ	ZALENDE/EiJ
ss367299443	MGP_WTSI_6_7504307	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	ST/bJ	ZALENDE/EiJ
rs213782309					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367299443	MGP_WTSI_6_7504307	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7554307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17147	CpG island 17147	488 bp proximal
Rr146475	regulatory region 146475	493 bp proximal
Tac1	tachykinin 1	754 bp upstream
Tssr54885	transcription start site region 54885	746 bp upstream