rs213783414 SNP Detail

Summary

• ID
  rs213783414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130547540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCATTCTG CTGACTGATC ACCTCTTTTT
  TCATGTGAGG CAGAGGAAGC CATGTTTCTA GGTTCCTTGG GTAGTAGTTG AATCAGGATT
  CAAACACTGG CTGGCTGGGG CCCCTTGAGC TTAGGCTCCT AAGGGTGGGG GCCCCTGAAG
  Y
  TTGGGGGTTT CTGAAGTTAG GGGGCCCTTG AGCTGGAGCC AGGGTTAAGC TAGGTAGGGC
  ACGGGGATTG AAGGAGAGAC CGTGATGAGG GTGGAGGGAC TCCAGGGGAC TGCAGCCTGG
  CCTGTGCCTT GCACCATGAA TGTGCACAGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318853	CHEV_4_130376144	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213783414					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130547540 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39265	transcription start site region 39265	1623 bp downstream
Tssr39266	transcription start site region 39266	1601 bp downstream
Tssr39267	transcription start site region 39267	1582 bp downstream
Tssr39268	transcription start site region 39268	1552 bp downstream
Tssr39269	transcription start site region 39269	1515 bp downstream
Tssr39270	transcription start site region 39270	1486 bp downstream
Tssr39271	transcription start site region 39271	1441 bp downstream
Tssr39272	transcription start site region 39272	1425 bp downstream
Tssr39273	transcription start site region 39273	1370 bp downstream
Tssr39274	transcription start site region 39274	1328 bp downstream
Tssr39275	transcription start site region 39275	1312 bp downstream
Tssr39276	transcription start site region 39276	1276 bp downstream
Tssr39277	transcription start site region 39277	1259 bp downstream
Tssr39278	transcription start site region 39278	1248 bp downstream
Tssr39279	transcription start site region 39279	1951 bp upstream
Tssr43599	transcription start site region 43599	1520 bp upstream
Tssr43600	transcription start site region 43600	1477 bp upstream
Tssr43601	transcription start site region 43601	1310 bp upstream