rs213787501 SNP Detail

Summary

• ID
  rs213787501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156192660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTGCCCA TTTCCCTGAT
  GTTCACTCCT GGGAGCAGAG GGCATCTGTC CCTGGATTTG TCCCTCTTCC TGGATTCTTC
  CCTTGAATAA ATAGCCTTTG TGAGATTCAC TGCCTGGAGT TACTCTGTCA TTGGAAGAAG
  CCAAGAAAAG AAGCTAAGAA GTTGAGGGTC CTGAGCTCCT CAGCTCAGTT GGGGATCCCT
  Y
  CCCTGGGAGC TGCAATGCGA GGAGGCTTCC TCTCAGAGCT GTGTGGTTCT TGGGTTCCTG
  AGCCCGCAGA CACCTTTCCA TCCTAGCAGA AGCATTTATA GTGAAAGAAG AGGTGCTAGT
  GTCCTGCGTA TGACTCTTCC CTCATACTCA CTGCCTACCA ACGCTCCGTG GATGTCAAGT
  CTCTGATGAA CACACACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321445482	CHEV_4_155482312	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213787501					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156192660 () rs orientation: forward

Symbol	Name	Function Class
9430015G10Rik	RIKEN cDNA 9430015G10 gene	1795 bp upstream
Cpgi15500	CpG island 15500	1426 bp proximal
Gm69135	predicted gene, 69135	within coordinates
Rr398931	regulatory region 398931	1537 bp upstream
Tssr40790	transcription start site region 40790	1768 bp upstream
Tssr40791	transcription start site region 40791	1810 bp upstream