rs213792562 SNP Detail

Summary

• ID
  rs213792562
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:84338866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGAGCA GAGAGCTTGG
  AATCCCGGAG ACTCCCTCTG AGCCTTCTCT AGCCTCAGCC TACCAAAGGG ACGTGAGGAC
  GCTGCCCGGC GTGCGGCAGC TGCTCCGGAC TGGCCCCAGG CGCGCCCACC CCGACCCCGA
  GCTCAGCGCG CGCCCGGGGA GCCCGGGACC GCGCCCCACC GGGACCGCGC CCTCCGCTCG
  M
  CACTGCGAGG CCACCTGCTG CGCCGCCCGC CGCTTCCGGC TCCCAGGCCG CCCGGAGGCT
  GCGCCCACCG CTGCCCGCAC TCCTCACCTG GCGGCGGCCC TCTCCGCCGG ACGCGCTGCC
  GCCGCCGCCT CTCGCCGCCG CTGAGAGTGA GGACAGGTGA GGCCGCCAAA CCCCCACTCG
  CTCCCGGCCC GCCGCCGCCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372145360	MGP_WTSI_7_91838168	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213792562					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372145360	MGP_WTSI_7_91838168	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:84338866 () rs orientation: forward

Symbol	Name	Function Class
2610206C17Rik	RIKEN cDNA 2610206C17 gene	within coordinates
Cpgi19383	CpG island 19383	within coordinates
Rr400423	regulatory region 400423	156 bp upstream
Rr650631	regulatory region 650631	625 bp distal
Rr650632	regulatory region 650632	within coordinates
Rr650633	regulatory region 650633	97 bp proximal
Rr650634	regulatory region 650634	289 bp proximal
Tssr73444	transcription start site region 73444	136 bp downstream
Tssr73445	transcription start site region 73445	165 bp downstream
Tssr73446	transcription start site region 73446	187 bp downstream
Tssr73447	transcription start site region 73447	246 bp downstream
Tssr73448	transcription start site region 73448	276 bp downstream
Tssr73449	transcription start site region 73449	290 bp downstream
Tssr73450	transcription start site region 73450	322 bp downstream
Zfand6	zinc finger, AN1-type domain 6	within coordinates