rs213792640 SNP Detail

Summary

• ID
  rs213792640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141940131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACCTGGC CCCTAGCCAC
  ATCGGTTCCC ACGTGGACTC TACAAAAAGG AGCCCCACCA ACCACCCCTA CCAGGCCTGC
  AGTGACATTA TCATCCTGGA CAGTCCCTGG AGGTTCTTCC CCTAACCATC CAAGAGGCTT
  CAACACCAAC TCCTCATGCT CTCCCTAGCC ATCCCTGCAC ACAATCTGGC AACTCTCACC
  Y
  AAGAAACCTA CATGCCCTAC CACCACAGAC TCAAGGCCCT TATATGCTCC CTGCAGCCCT
  GATGCAGACA ACTAAATAGG GGACGCCACC ATTAGATAGC AGAGGGAGAG GGGTCCCTGC
  CCTGCCCTCC AGGTCACCTC TCCACCACCA CCCCACCCCC CACCCCCAGT TTGCTCCTGT
  TCCCAAGGAG AGCTGATCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373450097	MGP_WTSI_7_149572299	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213792640					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373450097	MGP_WTSI_7_149572299	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141940131 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19961	CpG island 19961	1039 bp proximal
Ctsd	cathepsin D	within coordinates
Rr381604	regulatory region 381604	within coordinates
Rr658152	regulatory region 658152	1711 bp distal
Rr658153	regulatory region 658153	within coordinates
Rr658154	regulatory region 658154	1438 bp proximal
Rr658155	regulatory region 658155	1453 bp proximal
Tssr70145	transcription start site region 70145	905 bp downstream
Tssr70146	transcription start site region 70146	884 bp downstream
Tssr70147	transcription start site region 70147	606 bp upstream
Tssr70148	transcription start site region 70148	1776 bp upstream
Tssr70149	transcription start site region 70149	1832 bp upstream
Tssr75787	transcription start site region 75787	805 bp upstream
Tssr75788	transcription start site region 75788	783 bp upstream
Tssr75789	transcription start site region 75789	763 bp upstream
Tssr75790	transcription start site region 75790	493 bp upstream
Tssr75791	transcription start site region 75791	470 bp upstream
Tssr75792	transcription start site region 75792	457 bp upstream
Tssr75793	transcription start site region 75793	277 bp downstream
Tssr75794	transcription start site region 75794	431 bp downstream
Tssr75795	transcription start site region 75795	455 bp downstream
Tssr75796	transcription start site region 75796	1426 bp downstream
Tssr75797	transcription start site region 75797	1459 bp downstream
Tssr75798	transcription start site region 75798	1501 bp downstream
Tssr75799	transcription start site region 75799	1525 bp downstream