rs213796430 SNP Detail

Summary

• ID
  rs213796430
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69539563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGG ATCTGATGCC CTCTTCTGAT
  R
  TGTCTGAAGA CAGTGACCGT ATGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322693700	CHEV_8_71610810	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213796430					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69539563 () rs orientation: forward

Symbol	Name	Function Class
Atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2	1825 bp upstream
Cpgi20406	CpG island 20406	1592 bp proximal
Rr400869	regulatory region 400869	1575 bp upstream
Rr664484	regulatory region 664484	1245 bp proximal
Slc18a1	solute carrier family 18 (vesicular monoamine), member 1	within coordinates
Tssr77656	transcription start site region 77656	1805 bp upstream
Tssr77657	transcription start site region 77657	1822 bp upstream
Tssr77658	transcription start site region 77658	1842 bp upstream