rs213811213 SNP Detail

Summary

• ID
  rs213811213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152777628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTACCCAT GGGTCACTCT ATCTCCTTCA
  TACAAGTTCC TTACATCGCA CCTAATGAAT GCACACGACT CTCAGAATGG TATCTTCCAA
  CTACAGTTTC TTTCGAGAAC ATCACCTTGT TCGTAGCACC TCCCTCTTCC CTCGTCTCCC
  Y
  ATCCTTTTTC CCCCTTTCCG GGCTCTCCGA CCCCTCTAAC TCTGGACAGA AGGCATTATT
  TCTCCTCCTT CCAGCCCGCG ACTAAAGAAC AAGCTCGCGT TTCCTGCGGG CTCCCCTTCC
  TCTCATTTGC CCTCCAGAAT GCGCCCTCCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068820	CHEV_1_154749007	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213811213					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152777628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi860	CpG island 860	within coordinates
D1Mit502	DNA Segment, Chr 1 Massachusetts Institute of Technology 502	116 bp distal
Rr396386	regulatory region 396386	450 bp upstream
Rr396387	regulatory region 396387	1255 bp upstream
Rr420557	regulatory region 420557	within coordinates
Rr420558	regulatory region 420558	735 bp proximal
Rr420559	regulatory region 420559	1690 bp proximal
Smg7	SMG7 nonsense mediated mRNA decay factor	within coordinates
Tssr9437	transcription start site region 9437	967 bp upstream
Tssr9438	transcription start site region 9438	1020 bp upstream
Tssr9439	transcription start site region 9439	1926 bp upstream
Tssr14242	transcription start site region 14242	751 bp downstream
Tssr14243	transcription start site region 14243	859 bp downstream
Tssr14244	transcription start site region 14244	880 bp downstream
Tssr14245	transcription start site region 14245	1186 bp downstream
Tssr14246	transcription start site region 14246	1211 bp downstream