rs213818445 SNP Detail

Summary

• ID
  rs213818445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50825329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAACGTGA AGAGCCTCCG
  GACAGACCTC AAGCTTTGAG ATGCCTCCAA GAATGATCCA GCCTCTGCAG ACAGAACGCC
  TCAAACTGGT TTGGGTGCCA CAGCAAGATC TTCCCCTAAT GTGCCCCTAC CACAGCACTG
  AGTTAATACC CTTACAATAC CTGTTAGTTT GGGGTGGTTT TTTGTTTGTT TGTTTGTTTG
  Y
  ATTTTCAAAT TACATTGTAA CTATCTGTGA CAACATAAGC CATTTCTGTC TGATTCTTTT
  GTTTTTAATC TCCCAGCACC TGGTCCCAGG CCAGCACATA GTACTCTAGT AGATAAATAT
  GTGCTGAAGG AATAAAATAG AAAACTCTGT GAACCATGTT CAGATCTACA CTGAAATAAA
  GTTGAAATGT GCAAGGGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ
ss357917684	MGP_WTSI_3_50721830	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ
rs213818445					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357917684	MGP_WTSI_3_50721830	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50825329 () rs orientation: forward

Symbol	Name	Function Class
Gm37843	predicted gene, 37843	979 bp downstream
Gm64782	predicted gene, 64782	within coordinates