rs213820583 SNP Detail

Summary

• ID
  rs213820583
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59437349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGTCTGA AATCCATCCA
  TTACTCTGTT GGGCTTTTCG TTTTGTTTGT TTGATCACAG TGTTTCACAC TGTAGATTAA
  ACTACTCTGG AACTCACTAT GTAGCTCAGA CTGGCCTGGA ACTCACGGCA GGCAATCTTT
  CTACCTATCT CACACATTGG ATTCCTTTTT ACACACATTT CTAAAGACCT CTTACTATGG
  R
  ATGGGGCACC CCTCCCCTTT TCCGAAATCC AAGGAACCGC TCAGCTTGTC TCATGCATAA
  TGGCTGCCCA GTAAAACACA GTTGTCCTCT CCTCTGACCA GTACACCTTC TCAGAGCACT
  TGACACGTTC TGCTATTATG TGGGCAGACT TCGCCTCATT TTCCTGTTTG AATCCTCCGT
  GTCAGGTAAA TCCCACCACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141023	CHEV_4_59450221	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213820583					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59437349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14346	CpG island 14346	540 bp proximal
Rr101075	regulatory region 101075	within coordinates
Susd1	sushi domain containing 1	within coordinates
Tssr37430	transcription start site region 37430	804 bp upstream
Tssr41933	transcription start site region 41933	941 bp downstream
Tssr41934	transcription start site region 41934	996 bp downstream
Tssr41935	transcription start site region 41935	1301 bp downstream