rs213826735 SNP Detail

Summary

• ID
  rs213826735
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156031877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGGATAG ACACACTCAA
  GCCATGCTGT GATGTAGGTA CATGCCTGTT ATCCCATTCC TCAATTCCCA GCAAAGCAAT
  GGCCATGAAG CTGGTTCTAG CACAAAGCAG GCTACAGCAC AAGGGCAGGG TAGGAGTTTC
  CTGTACAGAA CAGAATGACT CAAGGAAATC TACAGCTTCT CAGTTGTGTC TTAGAGAGTA
  C
  AGACACCATG TTTCTCAGTT TGTGTCTTAC AGAGAGTACA GACATTGTTT TTGGAACTCT
  TCCCACATTG GCTTGGTTTT CAAATGCGTC ACTTTATTTT CACCCACGAC AGCCAGGTCT
  CTTAATCACC ACTAAGCTGG GGCTGGAGAG ATGGCTCAGT AGTTGAGAGC ACTGATTGCT
  CTTCCAGAGG TCCCAGGTGC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	NZB/BlNJ	PWK/PhJ	RF/J	SPRET/EiJ
ss356230938	MGP_WTSI_2_156015693	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	NZB/BlNJ	PWK/PhJ	RF/J	SPRET/EiJ
rs213826735					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356230938	MGP_WTSI_2_156015693	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156031877 () rs orientation: forward

Symbol	Name	Function Class
Rr568204	regulatory region 568204	1034 bp distal
Rr568205	regulatory region 568205	71 bp proximal
Rr568206	regulatory region 568206	1541 bp proximal
Rr568207	regulatory region 568207	1754 bp proximal