rs213828574 SNP Detail

Summary

• ID
  rs213828574
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43628223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCACAGAG GAGGCAGGGC
  TGGGGAGAGC AAAGGAGGAT GGCACACCAA AACAAAGACT GTAGGAAGAA ACCACTTTGA
  AACTTACTAC TTTGTAAGTA GTGAGGAGAA AAAGCCCCCA GAGCTAGGAG AAAGATTCTG
  TCACAGAGCT GTTGGTCACG GAGACTCCAG AGGCCCCCAA AGCAACATAA TCAGCCCTTT
  W
  AGTTGCCTAC CAAAACCCAG GTTTTGTTTG ATATTTAGTC TAAGGATCTA TTCCTTGTGG
  GGTTTTTGTT TGGTTGGTTT GGTTTGCTTT GGGTTTGTGT GTGTGTGTGT ATGTGTGTGT
  GTGTGTGTTT GGGATTTTTA GTTGTTTGCT TTTGTTTTTT TGTTTGTTTG TTTCTTTGTT
  TGTTTGTTTT TTACTACAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320269120	CHEV_2_43593731	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213828574					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43628223 () rs orientation: forward

Symbol	Name	Function Class
Rr556296	regulatory region 556296	within coordinates
Rr556297	regulatory region 556297	170 bp proximal
Tssr17595	transcription start site region 17595	1313 bp upstream
Tssr23873	transcription start site region 23873	464 bp downstream
Tssr23874	transcription start site region 23874	805 bp downstream