rs213837833 SNP Detail

Summary

• ID
  rs213837833
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101121388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTC AGCATTCTAC TTATTTAACG
  A
  CCCAAGTTTT TAATGCCTTC TTCCC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321229178	CHEV_4_100936796	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213837833					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101121388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14497	CpG island 14497	253 bp proximal
Jak1	Janus kinase 1	within coordinates
Tssr42547	transcription start site region 42547	665 bp downstream
Tssr42548	transcription start site region 42548	1023 bp downstream
Tssr42549	transcription start site region 42549	1045 bp downstream