rs213841221 SNP Detail

Summary

• ID
  rs213841221
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22445007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCCCTTA CTATGGACTG
  GACCATGTTC TCAGTTGTAG CCGACTGCGG CCACACTAAC TGGGTTCCTG AATGGGAGGC
  CGGAGCTGTA TGGGAGAGAA CTACGAGAGA AATAATGGAG GCCAAGACAT GTTTCTGTTC
  AAGGCCTCTG AAGTTTACTG AGAGTCCGTG CTTATAAAGA GGGTAGGCCC ATTCCCCCCC
  A
  CCCCCCAGCC CATTCTTGGT GCCTGGGGCC AGCCTGTAGG CGATCTACAG GGTGTGTCTC
  CGGACTGCCT CAAGGACATT TCAGCAGGAA GCAGAGTCTT GGAGAAGAGC AAATAGAGCC
  ATCAAGGTCA GAAGGCTCTC CCCTAGGTAA TCTCCTTCTT AGTGGCAGCA AGGTCAAAGT
  CTGGACACTC AGCACTTTCC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	SM/J	ST/bJ	SWR/J
ss367653036	MGP_WTSI_6_22395008	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	SM/J	ST/bJ	SWR/J
rs213841221					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367653036	MGP_WTSI_6_22395008	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22445007 () rs orientation: forward

Symbol	Name	Function Class
Rr379049	regulatory region 379049	within coordinates
Tssr59949	transcription start site region 59949	571 bp upstream