rs213842577 SNP Detail

Summary

• ID
  rs213842577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24099013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGATCGGT CTGACAACAC
  TACAGAAGAC CCGGGATTCG AACTCGAAAT CTCCAGAGCT GCCCACCCAG CCAAACAGCA
  GGCCCGCCCA GAGAAACAAT GCGCACGCGC CTTCTCAGCA GCAACATACT CCCTCGCCCC
  TCCGTAATCC GCATGCGTGC TGAAGCCAGC CACCTCCATT CACGCATGCT CAGTCTAACG
  Y
  GCACGTTGGG TTCGCTTGCG CGCCCAGCCC GCGGCGCATG CGCCGAGCTA GCAGCGCAGG
  CCGTGACTCG TTGGGCTGCG TACTGTGGCT TCCTCTTCTT CCTCCTCTGG GAGCTTCCGG
  GACGCCAAGG CCTGTTCCGG AATAGCCGGC ACCCGTTTTC TCGGCCTCTC TCATTCTCTG
  GCTTGTGACC TTCCGGCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370783923	MGP_WTSI_7_25184607	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	C	C	C	C	T	T	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	T	C	C	T	C	T	C	T	C	T	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213842577					SNP	T	T	T	C	C	C	C	C	T	T	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	T	C	C	T	C	T	C	T	C	T	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370783923	MGP_WTSI_7_25184607	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24099013 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	within coordinates
Gm74022	predicted gene, 74022	within coordinates
Rr643436	regulatory region 643436	1339 bp distal
Rr643437	regulatory region 643437	within coordinates
Rr643438	regulatory region 643438	42 bp proximal
Rr643439	regulatory region 643439	337 bp proximal
Rr643440	regulatory region 643440	985 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	93 bp upstream
Tssr64959	transcription start site region 64959	18 bp upstream
Tssr64960	transcription start site region 64960	86 bp upstream
Tssr64961	transcription start site region 64961	225 bp upstream
Tssr64962	transcription start site region 64962	371 bp upstream
Tssr64963	transcription start site region 64963	389 bp upstream
Tssr64964	transcription start site region 64964	425 bp upstream
Tssr71075	transcription start site region 71075	270 bp downstream