rs213845817 SNP Detail

Summary

• ID
  rs213845817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23936093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACTAACA TGATCTGCCT
  GTGTGTATCG GTTTGCAAAT ATTTGATTTT AGAATTGATA AACTACATTT ATTTAAACTA
  GGTCTTGCAA AGCTCACAAA ACCTACTTTA AATTTCTATG TTCACTTGTT TGATTACCTG
  AATTGAGTTT TCAAAGCTTG AGACAATTTG ATGTATGTAT GTAAGTAAAA TTATGTAAAA
  Y
  TTTCTTATGT AAAATTTCTG TTCACAGGAG TTATATACAC TACAGTGTAA AATTAAAGTG
  ATAGCAAAGA TGGAGGGGAA GAGAGGCGGA GAGTGTGCAT GTTCTGAAAG CTTTTTAACC
  AGGATTTAGA AGCAGAGGCT GACCAATCCC AACAAAGCGC GGGCCCTTTG AATGTTCTTC
  GGTCCAATAG CGGATAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324291415	CHEV_13_23843979	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213845817					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23936093 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	454 bp distal
Gm54518	predicted gene, 54518	595 bp upstream
H2ac4	H2A clustered histone 4	512 bp downstream
H3c2	H3 clustered histone 2	235 bp upstream
Rr403663	regulatory region 403663	970 bp downstream
Rr403664	regulatory region 403664	within coordinates
Rr475938	regulatory region 475938	974 bp distal
Rr475939	regulatory region 475939	717 bp distal
Rr475940	regulatory region 475940	480 bp distal
Rr475941	regulatory region 475941	within coordinates
Rr475942	regulatory region 475942	1559 bp proximal
Tssr118860	transcription start site region 118860	1024 bp downstream
Tssr118861	transcription start site region 118861	992 bp downstream
Tssr118862	transcription start site region 118862	903 bp downstream
Tssr118863	transcription start site region 118863	231 bp upstream
Tssr121747	transcription start site region 121747	85 bp downstream