rs213849620 SNP Detail

Summary

• ID
  rs213849620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50320880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAACATA CCGGATACTT
  ATCGTTGCAA AATTCCCACT TGTTGAAAAC TACTGACCCT CATTACCATT GTACTGAAAC
  GCACTAACAG AAACAGAAAT TCAGGGTCCA TGCCTGTGTC TAAAATATGC AAGCTTTGAA
  GTAAAGTATA TACTCTGGTT GCTGCTGATT CTAGAAGCTT CCTAAGGGCA AAACTCTCTG
  R
  ACAAACATAA TACCAAGAAG AACCTAGTTA AAATTTTGGT TGCATTTTTT TTTCTACAGC
  AGCAGTAATG AAATTCTCAG ATAAAACTAT TGTCTGACAA GTTTCTCCAA GAAGTGGTTA
  GGTTGCTCAG AATCATAAAA GAATTTTGGT GGCTTGTGAA GTAGTCGCTG TGATATACAT
  CCAGACATAT AGAAAAATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357906214	MGP_WTSI_3_50170353	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213849620					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357906214	MGP_WTSI_3_50170353	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50320880 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11			Intron
				mRNA-UTR
Tssr33101	transcription start site region 33101			1 bp upstream
Tssr33102	transcription start site region 33102			2 bp downstream
Tssr33103	transcription start site region 33103			86 bp downstream
Tssr33104	transcription start site region 33104			98 bp downstream
Tssr33105	transcription start site region 33105			159 bp downstream
Tssr33106	transcription start site region 33106			203 bp downstream
Tssr33107	transcription start site region 33107			228 bp downstream
Tssr33108	transcription start site region 33108			292 bp downstream
Tssr33109	transcription start site region 33109			357 bp downstream
Tssr33110	transcription start site region 33110			411 bp downstream
Tssr33111	transcription start site region 33111			444 bp downstream
Tssr33112	transcription start site region 33112			483 bp downstream
Tssr33113	transcription start site region 33113			529 bp downstream
Tssr33114	transcription start site region 33114			553 bp downstream
Tssr33115	transcription start site region 33115			612 bp downstream
Tssr33116	transcription start site region 33116			1017 bp downstream
Tssr33117	transcription start site region 33117			1247 bp downstream
Tssr33118	transcription start site region 33118			1274 bp downstream
Tssr33119	transcription start site region 33119			1300 bp downstream
Tssr33120	transcription start site region 33120			1850 bp downstream