rs213862811 SNP Detail

Summary

• ID
  rs213862811
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24022650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACCCACG GCTTGTCAAA
  ATCTAGGGAG TAAGAGACTG TGGTATGATC AGCTTTAAAA GGGCATCTGT GTCACATTCT
  TGATCATAAG GCTCAGGAAG CATTGTAGAA GAGGCATCTT AAGCACCAGA GGTAGTGGAC
  ATCTACTGCA AAACCTTCTT TGCCAGACAA GACAGCGCTG TTGTACACGT GAGCTCACAG
  Y
  AGCTGTGGCT GTAAACACAA GACCTGAGCA AGATCCAGCC AGCCAAAATC TCGCCACGGT
  CAGGGCGGGA GCTCATGAAG TCTCACCCAT GGCCGAGGAG CTATTGGCAA TTTATGGCTG
  CTAGCCGGTG AGAGCATCAG TTTTCTTCAG GGATTCAGAT TCTAAGATGC TATCCATATT
  CCATTAGATA GTTCAACACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324292294	CHEV_13_23930536	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213862811					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24022650 () rs orientation: forward

Symbol	Name	Function Class
Gm56568	predicted gene, 56568	268 bp downstream
Rr475959	regulatory region 475959	1753 bp distal
Rr475960	regulatory region 475960	771 bp proximal
Rr475961	regulatory region 475961	854 bp proximal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3	767 bp upstream
Tssr4011	transcription start site region 4011	958 bp upstream
Tssr4012	transcription start site region 4012	1056 bp upstream
Tssr118873	transcription start site region 118873	1757 bp downstream
Tssr118874	transcription start site region 118874	1706 bp downstream
Tssr118875	transcription start site region 118875	734 bp upstream
Tssr118876	transcription start site region 118876	778 bp upstream
Tssr118877	transcription start site region 118877	910 bp upstream
Tssr118878	transcription start site region 118878	931 bp upstream