rs213865474 SNP Detail

Summary

• ID
  rs213865474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:83574109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGAACAA GAGCACCCCC
  CTACCCCTTG CCCCATTCTC CACCTGGCCT CACCGAGGAC TCCTAACAGG AGGGCAGGAG
  GAAGTCTGCA CATAGCCCTC AGGTTCACAA GTTGCTCCCT TTCTTCAACA CATATGCGGT
  TTCCACATGT CTGTCCTGTG TGTGTCTGTG TACATGTGTG TGTACAAGCG TGTGTGTACG
  Y
  GTGTGTAGTG TATGTGTGTG TACACACGCA CTCGTGCACG CATGTGTGTG TGTGCATATG
  TGTGTCTGTA TGAGTACATG TATGTGTGTA CACGTGTGTG TGTGTGTGTA CGTGCGCATG
  CATGTGAAGG TGAAGGGACA CCTTGTAGGA CTGGGTTCTT TTCTTTACTG TGTGAGTCCC
  GGGGATCAAC CTCAGGTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324113677	CHEV_12_84868285	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213865474					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:83574109 () rs orientation: forward

Symbol	Name	Function Class
Dcaf4	DDB1 and CUL4 associated factor 4	within coordinates
Rr261746	regulatory region 261746	within coordinates
Rr264518	regulatory region 264518	1225 bp proximal
Rr265648	regulatory region 265648	908 bp distal
Rr268609	regulatory region 268609	493 bp proximal
Rr387528	regulatory region 387528	within coordinates
Tssr114259	transcription start site region 114259	1266 bp downstream