rs213866411 SNP Detail

Summary

• ID
  rs213866411
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88196999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCTTCCTC GCCCTGGTAA
  TTTTCGGCCT CTTTCTCACT CCCCTCCTGC CTCTCTCCTG CCTCCATTCC CGATACGTGC
  CAGTCAGAGG GGAAACACGA GGAATCCAGA GAAGGTTGAG TACTTCCAGC CCCCCATCAA
  GTTCCCCCGC TCCAGCTTGA GGTATGCTCG GTCGCCTTTC TCCATCTGGA TGAGGACGCC
  R
  TTGCTGGCGG CCTCGCGTGT CACGTCTTGG TCACCGGCGA AGGCTGAAAT CACCGGCCAC
  CCGTTCAACA TGAGGCTCAC CTAAGAAAGA AAGCGACCTA TATCAGAAGC GCCATCTAAG
  AGTACCCAAG CGGCGGCGAG CCAACCTAGG TGCTTGGCTG GCAGCCACGA AGGCCTGATG
  AGGCACGAGG TGTGCGGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss375465982	MGP_WTSI_8_89994270	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs213866411					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375465982	MGP_WTSI_8_89994270	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88196999 () rs orientation: forward

Symbol	Name	Function Class
Cbln1	cerebellin 1 precursor protein	within coordinates
Cpgi20770	CpG island 20770	680 bp distal
Cpgi20771	CpG island 20771	within coordinates
Cpgi20772	CpG island 20772	1224 bp proximal
Rr382427	regulatory region 382427	1096 bp downstream
Tssr82308	transcription start site region 82308	449 bp upstream
Tssr82309	transcription start site region 82309	262 bp upstream
Tssr82310	transcription start site region 82310	69 bp upstream
Tssr82311	transcription start site region 82311	80 bp downstream
Tssr82312	transcription start site region 82312	268 bp downstream
Tssr82313	transcription start site region 82313	297 bp downstream
Tssr82314	transcription start site region 82314	1750 bp downstream
Tssr82315	transcription start site region 82315	1790 bp downstream
Tssr82316	transcription start site region 82316	1829 bp downstream
Tssr82317	transcription start site region 82317	1994 bp downstream