rs213868662 SNP Detail

Summary

• ID
  rs213868662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30826038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAAGCAG CTGACTCCGC
  GTCTCCTCGC CCCCGGCCCG GCGCCCGCGG CGGCACCTCT GTACCAAGTG TCCCTCCACA
  CCCCCCCGAG AAACCCTTGC ATCTCCACGA TCCTTCTGTG CCGTCCAGGG TCCCGCGACC
  CCAACGACCT CGCACCCCGC ACAACTTCCC AGGCCGGGAC TTGGCGCGGC TCCGGCCACT
  Y
  GGGCGGGGGG CGTCCCGAGC GCCGACGGCG CGTGTCCCCC AGCAACACTC ACCCAGCGCC
  GCGCCCACCA CGAGAGCCAG CAGCGTCCCC ATGGCCGCGC AAGGCGGTGG GTGCGCAGAG
  CGCGGCGACA GGCGATGGGC CCCGGCGGCG ACTGGCCCGG GCGCGGGCGC GGCAGCTGCT
  GCTGGGGGGG CGCGCCCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss370923213	MGP_WTSI_7_31911632	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	T	C	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	C	C	T	T	T	C	T	T	T	T	T	C	T	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs213868662					SNP	T	C	C	T	C	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	C	C	T	T	T	C	T	T	T	T	T	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370923213	MGP_WTSI_7_31911632	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30826038 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	1188 bp distal
Cpgi18837	CpG island 18837	within coordinates
Rr645025	regulatory region 645025	within coordinates
Rr645026	regulatory region 645026	221 bp proximal
Rr645027	regulatory region 645027	1881 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71935	transcription start site region 71935	103 bp downstream
Tssr71936	transcription start site region 71936	146 bp downstream
Tssr71937	transcription start site region 71937	308 bp downstream
Tssr71938	transcription start site region 71938	337 bp downstream
Tssr71939	transcription start site region 71939	380 bp downstream
Tssr71940	transcription start site region 71940	551 bp downstream