rs213871677 SNP Detail

Summary

• ID
  rs213871677
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100462666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATGGACTG GGGAAATCAC TGGGGTCCAT
  GGCTGGGTAT GGGCTGCAGA TCGGAAGAGG GGGCAGTAGA GGTGGTCTTA GCCTGAATTT
  CTTATGTCGG CTGTGGGACA CACCCCGTCC GTCATCCACT TGGATTTCTC ATTAGCAGCC
  S
  CCCCCCACAG CCGATAGGCA TTTCCACAGG CTTCAGGCTC AATGTCCACT CCCCCCCCAA
  TACAGCGCCC TCTGTGGGGA GTGGCGTTCC CTGCCCTGGC CCCGTGCCCA CACTCGCCAG
  GCAGTTGGTC TCTAACCCGC CCGACACCCC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325907567	CHEV_X_98614399	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213871677					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100462666 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22868	CpG island 22868	82 bp proximal
Cpgi22869	CpG island 22869	649 bp proximal
Rr692835	regulatory region 692835	624 bp proximal
Rr692836	regulatory region 692836	728 bp proximal
Tssr163885	transcription start site region 163885	716 bp downstream
Tssr163886	transcription start site region 163886	728 bp downstream
Tssr163887	transcription start site region 163887	1146 bp downstream
Tssr163888	transcription start site region 163888	1288 bp downstream
Zmym3	zinc finger, MYM-type 3	within coordinates