rs213878787 SNP Detail

Summary

• ID
  rs213878787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112424964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCGGGGA AGTTAACTTG
  CGGAGGTCGC GGCCCACGGT GGTTCTTAAG AACGCGTAGA CCTCTCTTGC TCTGCCCTGT
  TTTGCTTGCT TCCTGCTTCA CACGTGGGAA ACTGAGGCCT GGGGTCACGT GCCCGGGCGC
  TGGGACTCAC AGCTAGGACG GGGCAGAAAC TCTCCCGCGG GGTTTTGTGC GCGCGAGCGA
  R
  CGTGTGACCC TCCCCCCTCC CCCCAGAGGT GGCTGCCCCT GTACCCACTG CTCCCGGTGT
  TCATACTGTT CCTTGCCCTC CCCAACCCCT TGTTTCTTTC ATTCTAGCAG GGATGCCCGA
  TGGTTAGTTA GGCCCAGCTT CTGCATTGGG GCAGATCGGG CTGGGAGGCT CCGGCTTAGT
  ATTGGGGACA TGCCCTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366277719	MGP_WTSI_5_112706118	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213878787					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366277719	MGP_WTSI_5_112706118	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112424964 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16258	CpG island 16258	within coordinates
D5Mit94	DNA segment, Chr 5, Massachusetts Institute of Technology 94	583 bp proximal
D5Mit94.1	DNA segment, Chr 5, Massachusetts Institute of Technology 94.1	680 bp proximal
Rr124048	regulatory region 124048	within coordinates
Rr124049	regulatory region 124049	1836 bp proximal
Rr399260	regulatory region 399260	522 bp downstream
Tpst2	protein-tyrosine sulfotransferase 2	within coordinates
Tssr47986	transcription start site region 47986	405 bp downstream
Tssr47987	transcription start site region 47987	342 bp downstream
Tssr47988	transcription start site region 47988	328 bp downstream
Tssr47989	transcription start site region 47989	358 bp upstream
Tssr52564	transcription start site region 52564	730 bp upstream
Tssr52565	transcription start site region 52565	716 bp upstream