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rs213879650 SNP Detail
Summary
  • ID
    rs213879650
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:16237162 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGTAACATTA CCAGTTTCTA
    GGGACATTTT AACATTTTCT TTTTTTCGGG AGGGGCAGCA GTCTTGCAAC TGTTTCTCTT
    TCCGAAGGCT ATTTTATTCA ATAAAAACCA ACCCCATCCC AGTAGAGAGT TAGAAAGCAT
    TCATTGAGAG CGTGCTCCCG CACCCCGCAC GCACGCACGC ACGCCCGGTG GTGGCTGAGC
    S
    GACAGGCGCT GCTGGACCGC TTCTGTAGCC TCCAGGCTAA CAACGCCCGA GCCCAACGCT
    CACGGTACCG CGCATGCGTC TAAAGTACAG CTGCGCCTCC GGGTCTCTGC CCCCCTCCCC
    TCTCCGATGA CGTGCACGGC GGGGGCGGAG CCCGAGGCCG TGGCGGGAGT GGGGGAGGAA
    CTGCGAGGTG TGCGTGGACG                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss357084029 MGP_WTSI_3_16082998 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213879650 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss357084029 MGP_WTSI_3_16082998 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:16237162 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12993 CpG island 12993 within coordinates
Gm64384 predicted gene, 64384 within coordinates
Rr397612 regulatory region 397612 within coordinates
Rr573790 regulatory region 573790 within coordinates
Rr573791 regulatory region 573791 249 bp proximal
Rr573792 regulatory region 573792 710 bp proximal
Tssr833 transcription start site region 833 615 bp downstream
Tssr28473 transcription start site region 28473 179 bp upstream
Tssr28474 transcription start site region 28474 210 bp upstream
Tssr28475 transcription start site region 28475 299 bp upstream
Tssr28476 transcription start site region 28476 866 bp upstream
Tssr32661 transcription start site region 32661 644 bp downstream
Tssr32662 transcription start site region 32662 835 bp downstream
Ythdf3 YTH N6-methyladenosine RNA binding protein 3 214 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory