rs213887470 SNP Detail

Summary

• ID
  rs213887470
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:73349587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCCACCC TTTGCCTGAA
  CTCATCACCT GCTCCAAGGC CTTGATTAGC ATCCCTTACC ATCTTGTGAT CAAACTAGGG
  GATGGAATAT GAAGATGGGT ATGGGGACAT TACAAGGGTG GGCCCTCATC ATGCTTTTCT
  GCTTTTTGGG ATGGGATAGG AAACCCATGG AATGTTCCAG AGACAGCAGG AGTGTGTGTG
  K
  GGGGGGTGTG GGGGGGGGGT AGTGACCACT TTACCTCTGC CCCAACTTGG TTTCCCATGG
  AGATCTCAGA CTGAATATAT ATCCTCAGCC TTTGTCCTTG GGTTAGTGAC TGACTGGTGA
  GGGTGTTTGT CTCTTCCCTG CCCCCGCCCC CCCCAACCCC CACCCCCGGC CTAAATCTTT
  TTAGTTTGAA CCCTGAGTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SM/J	SWR/J
ss403782940	MGP_WTSI_X_71551320	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	G	G	T	G	G	T	T	T	G	G	T	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SM/J	SWR/J
rs213887470					SNP	G	T	G	G	T	G	G	T	T	T	G	G	T	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403782940	MGP_WTSI_X_71551320	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73349587 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp6ap1	ATPase, H+ transporting, lysosomal accessory protein 1			1290 bp downstream
Cpgi22795	CpG island 22795			397 bp distal
Gdi1	GDP dissociation inhibitor 1			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr692006	regulatory region 692006			973 bp distal
Rr692007	regulatory region 692007			within coordinates
Tssr161329	transcription start site region 161329			1997 bp downstream
Tssr161330	transcription start site region 161330			1945 bp downstream
Tssr161331	transcription start site region 161331			1810 bp downstream
Tssr161332	transcription start site region 161332			1790 bp downstream
Tssr161333	transcription start site region 161333			945 bp downstream
Tssr161334	transcription start site region 161334			875 bp downstream
Tssr161335	transcription start site region 161335			703 bp downstream
Tssr161336	transcription start site region 161336			1202 bp upstream
Tssr163632	transcription start site region 163632			1290 bp upstream