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rs213891404 SNP Detail
Summary
  • ID
    rs213891404
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr8:75825887 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCTATGTAGC TCATTGACTG
    AGGTGCATAT AAAGCCCTTA AAAGTCACTG GCATAGAAAT TCTTCCATTT AGACCCCTCC
    TCCCATTTTG GGGGGAGGGG CACAGTCATG CTTTGTTAGC AGAGATCAAA CAATCTCTCT
    GCTTCAATCT TTCATAAAAA GCTAGGGTGT GTTTACCTTT TCAGACCCAC TAAAGGTTTC
    Y
    AAGCAGGTCC CCATATAAGG CAAGGATTTG GGAACCTATT TCTATTGCTG ACCCTCCAGG
    AGAGACAAAG GAGACATGTA CTTACCTGAC TCTGGGTGTC AGCCCTTCTC CTGTGCCTTG
    CTGTATTACC TTTGGAGCAG GAGAAAGTTT CAAAAAAGAC CAAAGTGACA CAAAATGTGC
    CTTCACTGAG CCTGTTACCC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss375182974 MGP_WTSI_8_77623158 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213891404 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss375182974 MGP_WTSI_8_77623158 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:75825887 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Hmox1 heme oxygenase 1 within coordinates
Tssr78061 transcription start site region 78061 1941 bp downstream
Tssr78062 transcription start site region 78062 423 bp downstream
Tssr78063 transcription start site region 78063 618 bp upstream
Tssr78064 transcription start site region 78064 648 bp upstream
Tssr78065 transcription start site region 78065 697 bp upstream
Tssr78066 transcription start site region 78066 747 bp upstream
Tssr78067 transcription start site region 78067 777 bp upstream
Tssr78068 transcription start site region 78068 816 bp upstream
Tssr78069 transcription start site region 78069 861 bp upstream
Tssr78070 transcription start site region 78070 910 bp upstream
Tssr78071 transcription start site region 78071 959 bp upstream
Tssr78072 transcription start site region 78072 980 bp upstream
Tssr78073 transcription start site region 78073 1041 bp upstream
Tssr78074 transcription start site region 78074 1093 bp upstream
Tssr78075 transcription start site region 78075 1118 bp upstream
Tssr78076 transcription start site region 78076 1157 bp upstream
Tssr78077 transcription start site region 78077 1249 bp upstream
Tssr81819 transcription start site region 81819 411 bp upstream
Tssr81820 transcription start site region 81820 1327 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory