rs213896291 SNP Detail

Summary

• ID
  rs213896291
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:27719690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGGCTGT CTAGCACAGT
  GGTTCTCAAC CCGTGGCTTG CAGTCCCCAC CGTGTTCACA TATCAGATAG ATATCCTGCA
  TATCAGATAT TTACATCACG AGTCAGAATA ATAGTAAAAT TACAATTATG GAGTAGCAAC
  TAAAATAATG TTATGATTGG GGTCACTGCA ACATGAGGCA CTGTATTAAA GGGTCGCAGC
  M
  TGAGGAAGGG TGAGGACCAC AGGTCTATCG CCACACTCAG TTATCCAAAG CTAATGTTTG
  TCACCTTCCC CATGGTAAAG AGTTCTCATC CACTTGCTGG AGATTTCTTC ATAAGAAACT
  AGAGTCGAGG GAGTCATGTG TCTGCATGTG AACGTGTGGG TGCATCAGGT GTCTCCCTCT
  ACTATTTTCC AGTTTATTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374045427	MGP_WTSI_8_28340134	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	A	A	C	A	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213896291					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	A	A	C	A	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374045427	MGP_WTSI_8_28340134	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:27719690 () rs orientation: forward

Symbol	Name	Function Class
Adrb3	adrenergic receptor, beta 3	within coordinates
Cpgi20219	CpG island 20219	1149 bp distal
Gm45470	predicted gene 45470	1159 bp upstream
Rr661485	regulatory region 661485	966 bp distal
Tssr80793	transcription start site region 80793	1621 bp upstream
Tssr80794	transcription start site region 80794	1433 bp upstream
Tssr80795	transcription start site region 80795	1143 bp upstream
Tssr80796	transcription start site region 80796	1106 bp upstream
Tssr80797	transcription start site region 80797	1075 bp upstream
Tssr80798	transcription start site region 80798	1143 bp downstream