rs213896847 SNP Detail

Summary

• ID
  rs213896847
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132239404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agagtgagt tccaggacag ccagggctac
  acagaagcct gtctcaaaaa accaaaaACA AATAAACAAA CAAATGCATA TACTCTGTGG
  GATGAGGATA GAGGATAATA TTACAGTGTC CACTTAGGAC CCCAAGGCCT TGGATTCTAT
  W
  CCCAATACCA CACAGACACA CGAACAGAAA TAACAATAAT GTCAGTAGCC AGGCTACATT
  TTTTTTTTCA GTATTATTTC ATCAGCTACT GAATAAAGTG AAACCTCTAG GTGGATCCTC
  AAGGCCTGCC AAGATACGTT TCAGCCTACA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321333918	CHEV_4_132068008	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213896847					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132239404 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	1318 bp distal
Gm68741	predicted gene, 68741	868 bp downstream
Rr377206	regulatory region 377206	1024 bp downstream
Rr377207	regulatory region 377207	976 bp upstream
Rr600991	regulatory region 600991	1954 bp distal
Rr600992	regulatory region 600992	1102 bp distal
Rr600993	regulatory region 600993	37 bp proximal
Rr600994	regulatory region 600994	941 bp proximal
Rr600995	regulatory region 600995	1111 bp proximal
Sesn2	sestrin 2	1637 bp upstream
Tssr43678	transcription start site region 43678	1616 bp upstream
Tssr43679	transcription start site region 43679	1602 bp upstream
Tssr43680	transcription start site region 43680	1584 bp upstream