rs213898607 SNP Detail

Summary

• ID
  rs213898607
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115055859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGGGTTT TGCCAGTGGT
  TGGTATTTCC CCCAAACAAC CCCAGTTTGG ATCAGCTGCT GGAGGGGCAG TTGGCAAAAC
  AGGAGTTGTG CTGAGAGCCT CCCTGTCCCT TAGAAAACAA GGAGGGAAGG AGGCCAGGTT
  CAGGGCTCAG ACCCTGGGAG CAGGGTCCCT TCAGTACGCA CTGGCTCTCT CTTCCTGATC
  K
  ATACCGCCGC CACATGTAGA TCAGCGGTAT CCATGGAGCC AGGAAGATCC TCCCTCCACA
  GGGAAAGGGC ACTGTTCAGC CCCGTAAGGT TGAAGGCGGA GCCTGAGAGT ACCAACTGGT
  TTGGTGGAAG TGAGGTCACC AGAAGCCCGG TTCTGCCAGA GTTTGACTCT GGGAATGCCA
  GGGCCACCAA GTTCCCACTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384822789	MGP_WTSI_11_115026347	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213898607					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384822789	MGP_WTSI_11_115026347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115055859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	704 bp distal
Cpgi4110	CpG island 4110	within coordinates
Gm72084	predicted gene, 72084	711 bp upstream
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Rr403111	regulatory region 403111	1670 bp downstream
Rr459783	regulatory region 459783	1682 bp distal
Rr459784	regulatory region 459784	221 bp distal
Rr459785	regulatory region 459785	443 bp distal
Rr459786	regulatory region 459786	1828 bp proximal
Tssr3727	transcription start site region 3727	1662 bp downstream
Tssr105840	transcription start site region 105840	1685 bp downstream
Tssr105841	transcription start site region 105841	1650 bp downstream
Tssr105842	transcription start site region 105842	1620 bp downstream
Tssr105843	transcription start site region 105843	1614 bp downstream
Tssr105844	transcription start site region 105844	1584 bp downstream
Tssr111730	transcription start site region 111730	1898 bp upstream