rs213899228 SNP Detail

Summary

• ID
  rs213899228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:56808848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTATCCT AGAGTTTGCT
  TCCACTACGC TCAAGACAGT TGGCAGTATC CTAGAGTTTG CTTCTGCTCT TGGTGTCTAC
  TGCCCCTTTA CCTAATAGTT TACTTCTTGG ATGCAAACTC TCCATTAAGC AAGTTCAAAT
  AAGTTTGAAA TGGTGTAAGA TTACAGGAGC ATTTGTAGGT CTAAATTATC TATCCTGTTG
  Y
  TGCTTTTAAA ATAAATACTA AATAAAACTA TTGTAAATGA AGTGATGTTT ATGAGAAAAA
  TCAAAACCTG ACCTTAGTCA TTTAAAGACA AAAAAAATAA AAGAAAAATT TTAGTTTTAT
  TATTAAAAAC AAACAAACAA ACAAAGCAGA ATTTGAAGTT GAATATTCTT TCTTTACAGT
  GAGTTGAATG ACTTTTGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325859372	CHEV_19_56894906	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213899228					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56808848 () rs orientation: forward

Symbol	Name	Function Class
1700010L13Rik	RIKEN cDNA 1700010L13 gene	1490 bp upstream
Ccdc186	coiled-coil domain containing 186	Intron
Cpgi11092	CpG island 11092	1221 bp proximal
Rr406045	regulatory region 406045	1701 bp upstream
Rr550139	regulatory region 550139	1876 bp distal
Rr550140	regulatory region 550140	1000 bp proximal
Rr550141	regulatory region 550141	1501 bp proximal
Rr550142	regulatory region 550142	1764 bp proximal
Tssr157215	transcription start site region 157215	1512 bp upstream
Tssr159886	transcription start site region 159886	1664 bp downstream
Tssr159887	transcription start site region 159887	1745 bp downstream