rs213900774 SNP Detail

Summary

• ID
  rs213900774
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:48663905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGGGTAG GGAAGTGGGG
  GGTAGGGTAT GGGGGACTTT TGGGATAGCA TTCTAAATAT AATTGAGGAA AATACGTAAT
  AATAAAAAAT ATTTTAAAAA ACAGTTAGCA AAGAGACTAC TTATGGAAGC AGTGTCATCC
  CAAAGACAGA AGAGGACTTA CAAGGGACTT GTGAGACAGA TCATGGGCAA TATCTTTTCT
  S
  TCTTACTCAG CTAACTATCC CTCCACTGTA ACGAAGACTC TCTCTTGCAC TAGTGTCAAG
  ACTATGAACA GATGGGCCTC CTGCCCTGCT GGTGAGTAAT TCCTCAAGGA GAATTTGTGA
  CTGTGCTGTC CCTGTGTCCT CTCCCATCAA TCTCCTAATA CCACCTTCTC CTAACTCCAG
  TTTGTACTGC CATGGAGCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396216302	MGP_WTSI_16_48843655	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213900774					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396216302	MGP_WTSI_16_48843655	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48663905 () rs orientation: forward

Symbol	Name	Function Class
Retnla	resistin like alpha	Intron
Tssr138680	transcription start site region 138680	1055 bp downstream
Tssr138681	transcription start site region 138681	962 bp downstream
Tssr138682	transcription start site region 138682	911 bp downstream
Tssr138683	transcription start site region 138683	881 bp downstream
Tssr138684	transcription start site region 138684	847 bp downstream
Tssr138685	transcription start site region 138685	806 bp downstream
Tssr138686	transcription start site region 138686	687 bp downstream
Tssr138687	transcription start site region 138687	645 bp downstream
Tssr138688	transcription start site region 138688	1 bp upstream
Tssr138689	transcription start site region 138689	629 bp upstream
Tssr138690	transcription start site region 138690	687 bp upstream
Tssr138691	transcription start site region 138691	724 bp upstream