rs213912045 SNP Detail

Summary

• ID
  rs213912045
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69341965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aagtaaagc tgcctcttct ctctctctgc
  actggccctt gaggagttcc cctttcctct ccttgtgagc gttgggtaca tcctgttcta
  tcaaatcttt ctctgatctg ccactatgtc tgctattcaa ctaaacatca ctttcaaaca
  K
  gggtgcttcc ttctacaaac taactttacc ttcatcattt gagattaaag tgtgtgctaa
  gggtgtgtct gtattccaat cagagTAGCC ATGTTGCTGG ATAAAAATCC TTCTACAATG
  GCCCAGGACT ATTTGTAACT ATTGATAGTC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324083684	CHEV_12_70396178	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213912045					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69341965 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4692	CpG island 4692	1227 bp proximal
Klhdc2	kelch domain containing 2	1490 bp upstream
Rr467019	regulatory region 467019	599 bp distal
Rr467020	regulatory region 467020	1041 bp proximal
Rr467021	regulatory region 467021	1542 bp proximal
Tssr113629	transcription start site region 113629	791 bp upstream
Tssr113630	transcription start site region 113630	1485 bp upstream
Tssr113631	transcription start site region 113631	1640 bp upstream
Tssr113632	transcription start site region 113632	1737 bp upstream
Tssr113633	transcription start site region 113633	1747 bp upstream
Tssr113634	transcription start site region 113634	1773 bp upstream
Tssr113635	transcription start site region 113635	1781 bp upstream