rs213913336 SNP Detail

Summary

• ID
  rs213913336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100855021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTATGCAAT GGCAGGCTCT ATACCAGCCA
  AACTGAATTG TCCGGACATC AGTGTTCTGC CAAGTTCCCT AGTCAACACT AAAATGGATG
  TGCAAGTTGA ACCTTCTCTA CAGACCCACA GAGCAGTGGT GTCAGGGTCA AAGCTCCAAG
  Y
  GCAGAGCCCT GCCAGCTTAC TACACTGGCT AAACTGTAGA AGGTTCTCCA GTCCAGCCCC
  TCAGTTATAT GTGGAAGAGC TCAAGCTCCA TGGGCCAGAA TTTCATGGAT GGAGCCTAAG
  CACTAAAAGA TGACTATGAC TGAGCTGTGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324138832	CHEV_12_102126972	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213913336					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100855021 () rs orientation: forward

Symbol	Name	Function Class
Gm36572	predicted gene, 36572	within coordinates
Gpr68	G protein-coupled receptor 68	within coordinates
Rr471362	regulatory region 471362	424 bp distal
Rr471363	regulatory region 471363	842 bp distal
Rr471364	regulatory region 471364	1887 bp proximal
Tssr117330	transcription start site region 117330	898 bp upstream
Tssr117331	transcription start site region 117331	875 bp upstream
Tssr117332	transcription start site region 117332	861 bp upstream
Tssr117333	transcription start site region 117333	826 bp upstream
Tssr117334	transcription start site region 117334	804 bp upstream
Tssr117335	transcription start site region 117335	725 bp upstream
Tssr117336	transcription start site region 117336	681 bp upstream