rs213913625 SNP Detail

Summary

• ID
  rs213913625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16347112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAAGGAC CAAACATAGA
  ACACAAGGAG ACTGGTGTTG AAGATGATCA CTTTGACAGG GACAGCAACA GTAAAGTTCA
  AGACGATTCA AAACTATGTA GACAAATGGA CAGCTCCAAA AGAGAGGAAA GAGCACCAAA
  TAAAGAGAAT GAAGGGGAAA AGCCGGTAGA AGAAAAGGGC AGAATGGGCA GCGTGTGAAG
  R
  ATCAGGGTCA GAGTCATCTA AAGTGCAGAG AAACACCAGG AGCAAGGAAG ACATAGGCAG
  CAAGTCCTAG GTGTAGATGA ACTTACTGGT GATGGGTTTG TGGGGAGAGA GAGCAAATGA
  ATGAAGCAGA GCAGAGGGGC ATTGAAATAA AGGTGGGAAA GAGAGGAAAC TCAACGAGAA
  TAGAGGTGCA GAGAGAGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370695711	MGP_WTSI_7_17198536	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213913625					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370695711	MGP_WTSI_7_17198536	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16347112 () rs orientation: forward

Symbol	Name	Function Class
Arhgap35	Rho GTPase activating protein 35	within coordinates
Cpgi18383	CpG island 18383	629 bp proximal
Gm29443	predicted gene 29443	637 bp upstream
Rr642705	regulatory region 642705	1341 bp distal
Rr642706	regulatory region 642706	150 bp proximal
Rr642707	regulatory region 642707	648 bp proximal
Rr642708	regulatory region 642708	1796 bp proximal
Rr642709	regulatory region 642709	1901 bp proximal
Tssr70753	transcription start site region 70753	1361 bp downstream
Tssr70754	transcription start site region 70754	1426 bp downstream
Tssr70755	transcription start site region 70755	1483 bp downstream
Tssr70756	transcription start site region 70756	1591 bp downstream
Tssr70757	transcription start site region 70757	1605 bp downstream
Tssr70758	transcription start site region 70758	1662 bp downstream
Tssr70759	transcription start site region 70759	1694 bp downstream
Tssr70760	transcription start site region 70760	1771 bp downstream
Tssr70761	transcription start site region 70761	1867 bp downstream
Tssr70762	transcription start site region 70762	1886 bp downstream