rs213918336 SNP Detail

Summary

• ID
  rs213918336
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172027570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTCGTCC TTCGGCTTTC
  CTCCCTGCTG TCAGACCCCA GCCAGACTCG TTCATAGGAA GGACTCTGGG GTGACTTCAG
  TTTCACACAC CTGTAACTAA CTCGGCTGCC TTAGACCCAA TATTTTTTAG CCCAGCTAAC
  GTAGACTGTG TTCTTTTGCT TAACATGTTC TCTGGGTTCT ACCTTAGACA TACCATTTGC
  K
  TTTGGAGGCA GTCTATTATC AGCAACTTGG GGGGGGGGGC TCTCTCCTTC CAAGGTGAGC
  CCTGGGCCCT CTTGTTAGGC ATACATGGCA AATCCTTTTA CCTGCTATCC TGCCAGCACT
  TGGGGCCATC TTAAATGCCA TTTGACCCTT CGAGCCCCAG CTGCATGGCA TTGCTCTAAT
  CCAGTGTCTC CCTCCCACCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352400828	MGP_WTSI_1_174130134	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213918336					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352400828	MGP_WTSI_1_174130134	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172027570 () rs orientation: forward

Symbol	Name	Function Class
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr28998	regulatory region 28998	430 bp proximal
Tssr10176	transcription start site region 10176	1767 bp downstream
Tssr10177	transcription start site region 10177	1378 bp downstream
Tssr10178	transcription start site region 10178	1332 bp downstream
Tssr15152	transcription start site region 15152	1942 bp upstream
Tssr15153	transcription start site region 15153	1924 bp upstream
Tssr15154	transcription start site region 15154	1801 bp upstream
Tssr15155	transcription start site region 15155	1660 bp upstream
Tssr15156	transcription start site region 15156	1487 bp upstream
Tssr15157	transcription start site region 15157	1444 bp upstream
Tssr15158	transcription start site region 15158	835 bp upstream
Tssr15159	transcription start site region 15159	796 bp upstream
Tssr15160	transcription start site region 15160	754 bp upstream
Tssr15161	transcription start site region 15161	481 bp downstream
Tssr15162	transcription start site region 15162	538 bp downstream
Tssr15163	transcription start site region 15163	554 bp downstream