rs213918738 SNP Detail

Summary

• ID
  rs213918738
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24304636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATATGAT TAGAATATAT
  TTAATTTAAA AGTTATCTTA AATAAAACAT GTTGAAAGGG GGCATCATAT ATATATGACG
  TCTAAAACTT CCAAAAGGAT TTTCTCACTG TGCTGTGGTC CACCAACTTG ATGCTCCCAC
  CAGTGTATCT GGTAAACGCC TTGATTAACT TTCTTCCCCC ACCTCCTGCA GATAAATATA
  H
  TTATCTAATC TCTTTTATAA AGAAACATAC TGTCCAGGAT ATGTTCAATC CCTTTTTAGG
  CCATTGCTGA CCCTATGCAG CTTAAAATAA TTTATTTAAT TTTCTTTTAA GCAGTTATTG
  TTTTAGATCA ACAGCGGTCT AGATCATTTT ACATAAAACT TCTGTCTAGT TCTTCATACA
  TCTAGGTAGA AAACTGAGGC                                            
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SPRET/EiJ	ZALENDE/EiJ
ss364281774	MGP_WTSI_5_23605456	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SPRET/EiJ	ZALENDE/EiJ
rs213918738					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364281774	MGP_WTSI_5_23605456	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24304636 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15589	CpG island 15589	727 bp proximal
Gm71592	predicted gene, 71592	within coordinates
Klhl7	kelch-like 7	967 bp upstream
Rr398996	regulatory region 398996	793 bp upstream
Rr608239	regulatory region 608239	283 bp proximal
Rr608240	regulatory region 608240	843 bp proximal
Rr608241	regulatory region 608241	996 bp proximal
Tssr45399	transcription start site region 45399	940 bp upstream
Tssr45400	transcription start site region 45400	1057 bp upstream
Tssr50303	transcription start site region 50303	829 bp downstream