rs213921780 SNP Detail

Summary

• ID
  rs213921780
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55564728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACAAAG GCAGAAGGAG
  AGAACTGGCT CCACAGAGTT GTGCTCTGAC CTTCACACCA CACTGTGACA CACTCATAAC
  ACAAACCACA TTTTTTTCTT TTTTTTTTTA AGATTTATTT ATTTATTTAT TTATTTATTA
  CATGTAAGTA CACTGTAGCT GTCTTCAGAC GCTCCAGAAG AGGGCATCAG ATCTCATTAC
  R
  GATGGTTGTG AGCCACCATG TGGTTGCTGG GATTTGAACT CCAGACCTTC AGAAGAGCAG
  TTGGGTGCTC TTACCCACTG AGCCATCTCA CCAGCCCCAT TTTTTTTTCT TAATTAAAAA
  AAAAAAAAAA AGCCAGACAT GGTGGCTTGT ACTTAAACCT GTCACTCATG AAGCAAGGGG
  ATCTGTACAA GTTCAAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss388686378	MGP_WTSI_13_55518276	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	G	G	A	A	A	G	A	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs213921780					SNP	G	G	G	A	G	G	A	A	A	G	A	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388686378	MGP_WTSI_13_55518276	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55564728 () rs orientation: forward

Symbol	Name	Function Class
BC038268	cDNA sequence BC038268	1323 bp downstream
Cpgi5668	CpG island 5668	1574 bp distal
Cpgi5669	CpG island 5669	1315 bp proximal
F12	coagulation factor XII (Hageman factor)	1043 bp downstream
Pfn3	profilin 3	1683 bp upstream
Rr480459	regulatory region 480459	1352 bp distal
Rr480460	regulatory region 480460	1547 bp proximal
Tssr122694	transcription start site region 122694	1664 bp upstream