rs213923578 SNP Detail

Summary

• ID
  rs213923578
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126680062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGGGCT ATGCAGAGAA
  ACCCTGTCTC GAAAAACAAA AAAAGAAAAG AAAAAGAAAA AAGAAAAGAA AAGAAAAGAA
  ATCAAACAGT TTAAATAAAT AAATCTTTTA ATACCCATTA ATATTATATT AATATAGCAC
  TATATTAACA TATGTTATAT TAAATGTCTA TTAACATATA TTATATCATT AATATAATAC
  K
  AATTCTATTA TATTAATATA ATAAGTAATA TATATTAATA TATTTCAAAT GAAATTCTCA
  GAGTATAATA AAAATTAAAG AAAAGAGAAA AGGTGGAGAA CTAGCTGGGC ACTGGTTGGA
  ATCAGATGAC CTGAATTCAA GATGACTTCT GTGTAACTTT TGTTTCAGGT TGCTTTGCTT
  GTGGCCCTGT GTATCAGACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss382171992	MGP_WTSI_10_126281249	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs213923578					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382171992	MGP_WTSI_10_126281249	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126680062 () rs orientation: forward

Symbol	Name	Function Class
Gm66841	predicted gene, 66841	1726 bp upstream
Rr440688	regulatory region 440688	452 bp proximal
Rr440689	regulatory region 440689	687 bp proximal
Rr440690	regulatory region 440690	1236 bp proximal